1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGgtgcttctttacattctttactcagggtttaggttcttctttacacttgtagctatctttacacttgcagtttgaagcacagaatgtgtcccattacatcggttgttcatatgttatgtgtatccaacaacttcttaatttgtcacaatctcactattttatgcag
species | Oryza sativa |
transcript | LOC_Os07g06980.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG CGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCCEST: gi|218482428|gb|FG960539.1|FG960539
genomic: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGgtgcttcttt ... ttttatgcagCGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCC
EST: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG CGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCCEST: gi|117232793|gb|CT842287.1|CT842287
genomic: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGgtgcttcttt ... ttttatgcagCGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCC
EST: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG CGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCCEST: gi|29644493|gb|CB649500.1|CB649500
genomic: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGgtgcttcttt ... ttttatgcagCGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCC
EST: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG CGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCCEST: gi|55410299|gb|CV722675.1|CV722675
genomic: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGgtgcttcttt ... ttttatgcagCGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCC
EST: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG CGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCC
genomic: TGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGgtgcttcttt ... ttttatgcagCGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGgtgcttctttacattctttactcagggtttaggttcttctttacacttgtagctatctttacacttgcagtttgaagcacagaatgtgtcccattacatcggttgttcatatgttatgtgtatccaacaacttcttaatttgtcacaatctcactattttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT