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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCATGTTCAGGGGCATCTACCACGGCAAGCAATGCCACGCCGCCGACATCCCCGCCGTGCTCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATCgtacgctgctttgctgccggccattccccctttcgccttctttcttgcttggtttctactttcttatggctcggctttggtgtgcttaatctcttgctttctttggtttggtccgggcggaag

Basic information

species Oryza sativa
transcript LOC_Os07g06440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g06440.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G095969_T01 (Zea mays), 5'ss of exon 2
TGGCATGTTCAGGGGCATCTACCACGGCAAGCAATGCCACGCCGCCGACATCCCCGCCGTGCTCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATCgtacgctgctttgctgccggccattccccctttcgccttctttcttgcttggtttctactttcttatggctcggctttggtgtgcttaatctcttgctttctttggtttggtccgggcggaag
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||||||| |||||||| ||| | ||     | |||||          | ||| ||  ||||| ||| |  | |||         | ||||| ||    ||    ||  |||| |   | ||| |||| |  |||||| ||
TGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCATTgtaag-tgtgcccccgccgg----------tgtcgtctcttttctcgct-gcctcctaac-----gcgcctcggtttcctggt----aaattcttcccacccttgttttgctg-gggcggcag

upper sequence: LOC_Os07g06440.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 3
TGGCATGTTCAGGGGCATCTACCACGGCAAGCAATGCCACGCCGCCGACATCCCCGCCGTGCTCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATCgta---cgctgctttgctgccggccattccccctttcgccttctttcttgcttggtttctactttcttatggctcggctttggtgtgcttaatctcttgctttctttggtttggtccgggcggaag
||||||||| | ||| |||||||||||||||||||| |||| | | || ||  |  | ||  |   | | || ||||| |||||||||  ||| || || |||    ||  ||   |||     ||  |  ||||||   | || |  |||   |||| || |||||||||  |     | | | ||||| |    ||  ||                        
TGGCATGTTTAAGGGAATCTACCACGGCAAGCAATGTCACGTCTCGGATATTGCAACTGTTTTGAACAGAGCTTGGGCTGCCGGCGTCACCCGAATTATTgtaatgtgcccctgccctgtttctcaaccaacctttcaaat-ctgtaatgccaagttt-tattttcttatgagtga---tagttctgctttaatcattaattaaa---------------------