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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag

Basic information

species Oryza sativa
transcript LOC_Os07g03250.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G008234_T01 (Zea mays), 5'ss of exon 2
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaat-ttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag---
| ||||| ||| |||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||   ||    ||  |   ||  ||||| || | |   ||| ||    |   | |  ||  |   | ||  |     || |    ||  ||   || ||    
GCGGGTACGACGTGGAGGAGAAGGCGGCGAGAGCCTACGACCTGGCGGCGCTCAAGTACTGGGGCCCTTCCACGCACATCAACTTCCCGgtaaaatattctctctctcgtaacattttggtttttt--ttaccgtggcgtgcatggcaggaca--cgcatggtaaatctgtaacaatagataca-atacaatgg

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA17G17010.1 (Glycine max), 5'ss of exon 5
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaat--caattcaattaaaatttttgattc-tgtaagtactg--ttaa--ttaattagttg--gttaattgaataatgtgcatgcatatgtatgtatgtatgcag-----------------
| || ||||| ||||| || ||||| || ||||| ||||| || || || |||||||||||||| || ||||| ||||| ||||| || ||||| | |   || | | ||    ||| |  | | |||    ||||  | ||  || | ||  ||    |||   |||||| |    |||| | | |   | | | |                   
GGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTAGCTGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaataactaataacttatttctcttttctcttccatgtttccactgactcaagtttcagtaactgtgactaaaataataatcttatggcattttttttcttcttttccattctcttctaataaaag

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag
|||| ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| ||||| |||||||| ||||||||||||  |  ||||||||  |   |||| ||  | | ||| || ||| | ||   |  ||||  | |   ||  | |   |  || ||   |           
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtt-tcaattcaggtggcatttctggct-tataa-tattgt-actt--ctccttgg--agtcccattttctctttctatttggcag-----------

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA04G05080.1 (Glycine max), 5'ss of exon 5
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag
| || ||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| ||||| || || || |||||  |||||  |  ||| |||   ||  ||||||   ||  | | |      |||   ||   || |  |    | | | |   ||  ||     | |         
GGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGgtatatt-tcatttcgtgtagcattttt--ctccttgatt----cgaatcttttg--tgctcgaaatcacactctttttgtttactctggcag--------

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA14G10130.1 (Glycine max), 5'ss of exon 7
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag
|||| ||||||||||| |||||||| || || || ||||| || ||||| |||||||||||||| ||||| || ||||| |||||| |||||  |  |||||||   |   |||| ||  ||   ||||| |||  |    || |  |    |||   |    || ||      |               
GTGGTTATGACATGGAAGAGAAAGCCGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCTCGgtatgtt-tcaattctggtggcatttctggctc--aaagtattgtacaactctttggagtcccattttctctcttgtatttggcag---------------

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 7
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaa--ttaatcaattcaattaaaatttttgattc-tgtaagtactgttaattaat--tagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag-----------------
| || ||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| || ||||| ||||| ||||| || ||||   |||| |||  | ||    ||| |  | | |||    ||| | || |     ||  || | | |  ||||||   |      |  | | | | | | |                   
GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaat-aatatatttcttttttctcttccatgtttccactctcaagttgcagtaactg-tgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv18s0001g08610.t01 (Vitis vinifera), 5'ss of exon 5
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag
| |||||||| ||||| |||||||| || ||||| || || |||||||| ||||| || ||||| ||||| || || ||||||||||||||| | | ||||  |      ||| | | | ||  |  ||    |||| |  |||    |  | |    |  | |     ||                   
GGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgta-tgattcaacactggattaatctctcaatccattggtgac-ttaaattcttaaaacgcaattcttctgctctttggacag------------------

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatc-aattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag
| || ||||||||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| ||||| || || ||||| ||||||||||| | |  ||  | |||  | |       |||||  || || |  | |    |    ||   |||  |  || |||                       
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttg-gcag----------------------

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ26861 (Selaginella moellendorffii), 5'ss of exon 4
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaa--atttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag
| || |||||||  || |||||||| ||| |||||||||| ||||||||||||||||||||||| ||| | ||   ||||||||| || ||||  | ||  | |  ||  |  |||  |||      ||| || ||   | || ||  |  |   | | || |                             
GGGGTTATGACAAAGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtaag-attccttcctcttgtattattcatgaactcacaag-accgtgtgtaaactacgttttggttggcatcag----------------------------

upper sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ21317 (Selaginella moellendorffii), 5'ss of exon 4
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaa--atttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag
| || ||||||| ||| |||||||| ||| |||||||||| ||||||||||||||||||||||| ||| | ||   ||||||||| || || |  | ||  | |  ||  |  |||  |||      ||| || ||   | || ||  |  | | | | || |                             
GGGGTTATGACAAGGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtgag-attccttcctcttgtattattcatgaactcacaag-accgtgtgtaaactacgttttgattggcatcag----------------------------