1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGCTTGATATTTGAATATGTCAACAACACAGATTTCAAAGTGCTATACCCAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattctttctcaattttttgttactgtaacattgccaacaagaaactacttattcagcacttttccagagtatcgttcttgttgaaatgaaatctt...
species | Oryza sativa |
transcript | LOC_Os07g02350.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCTEST: gi|117220732|gb|CT845509.1|CT845509
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCTEST: gi|58691077|gb|CK079764.1|CK079764
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCTEST: gi|29663346|gb|CB659621.1|CB659621
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCTEST: gi|29657465|gb|CB653740.1|CB653740
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCTEST: gi|428809|gb|D24965.1|D24965
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGNCTEST: gi|29662230|gb|CB658505.1|CB658505
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCTEST: gi|11442779|gb|BF430681.1|BF430681
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCTEST: gi|27577759|gb|CB000454.1|CB000454
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
EST: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAG GCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
genomic: CAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattct ... atgggtgcagGCTTTAGATTACTGCCATTCACAAGGCATCATGCACCGCGATGTGAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTTGATATTTGAATATGTCAACAACACAGATTTCAAAGTGCTATACCCAACCCTGACAGATTATGACATCCGTTATTATATCTACGAGCTACTGAAGgttttattctttctcaattttttgttactgtaacattgccaacaagaaactacttattcagcacttttccagagtatcgttcttgttgaaatgaaatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG