Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGTAGGGTGCGACCTTTATTGCCAAATGAATCAGGAGCTGTTGCTTATCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATGgtatagtaacacttactgcgatccttctgtgttttttactttcatgtctgcacctcttggaagatttatctcattccagtaaatcttcatttttcttcacag
Basic information
species | Oryza sativa |
transcript | LOC_Os07g01490.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g01490.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G436981_T02 (Zea mays), 5'ss of exon 9
------------------------TTCTGTAGGGTGCGACCTTTATTGCCAAATGAATCAGGAGCTGTTGCTTATCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATGgtatagtaacacttactgcgatccttctgtgttttttactttcatgtctgcacctcttggaagatttatctcattccagtaaatcttcatttttcttcacag
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GAGTTGAAGGGAAACatcagagtattttgtagagttaggcctttgctgccaaatgaatcaggagcagtatcatatccaaagaatggagaaaacttaggccgaggcattgagttgt---------------------------------------------------------------------------------------------------------------
upper sequence: LOC_Os07g01490.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G436981_T01 (Zea mays), 5'ss of exon 9
TTCTGTAGGGTGCGACCTTTATTGCCAAATGAATCAGGAGCTGTTGCTTATCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATGgtatagtaacacttactgcgatccttctgtgttttttactttcatgtctgcacctcttggaagatttatctcattccagtaaatcttcatttttc----ttcacag
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TTTTGTAGAGTTAGGCCTTTGCTGCCAAATGAATCAGGAGCAGTATCATATCCAAAGAATGGAGAAAACTTAGGCCGAGGCATTGAGTTGTTACATAATGgtatagtcatcattacagtcatttttctag--ttttaaatttgatatat-tatatttgagaatacaaattatgatacaattgcattgcatttcttattgttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|157651703|gb|EX451337.1|EX451337EST: TCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATG CTCAAATGTATTCTTTCACATTTGACAAAGTATTTGAGCAGTCGGCATCAC
genomic: TCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATGgtatagtaac ... ttcttcacagCTCAAATGTATTCTTTCACATTTGACAAAGTATTTGAGCAGTCGGCATCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGTAGGGTGCGACCTTTATTGCCAAATGAATCAGGAGCTGTTGCTTATCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATGgtatagtaacacttactgcgatccttctgtgttttttactttcatgtctgcacctcttggaagatttatctcattccagtaaatcttcatttttcttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA