1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGACGACGCTGACAGTGACCTAGAGGAGGAGATCCAGGATGTCCCCAGGGGTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgctattcactcacattatattctttactacactacaatataggactactagtatattattactacacattgaaaccctactgtagtttgcata...
species | Oryza sativa |
transcript | LOC_Os07g01320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAG GCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCAEST: gi|88742256|gb|CI765764.1|CI765764
genomic: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgct ... tacttgccagGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCA
EST: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAG GCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATEST: gi|66917239|gb|CX104087.1|CX104087
genomic: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgct ... tacttgccagGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGAT
EST: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAG GCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCAEST: gi|12404832|gb|AU166433.1|AU166433
genomic: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgct ... tacttgccagGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCA
EST: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAG GCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCAEST: gi|88333113|gb|CI640956.1|CI640956
genomic: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgct ... tacttgccagGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCA
EST: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAG GCCGAAGAAGCAGCCCGGGATTEST: gi|58596966|gb|CK007494.1|CK007494
genomic: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgct ... tacttgccagGCCGAAGAAGCAGCCCGGGATT
EST: CGAGAGGCCCAGCGTCAG GCCGAAGAAGCAGCCCGGGATTCGAGGAGGAGTAAACAAGATCGCTATGCAEST: gi|218488561|gb|FG963885.1|FG963885
genomic: CGAGAGGCCCAGCGTCAGgttgcttgct ... tacttgccagGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCA
EST: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAG GCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCA
genomic: GTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgct ... tacttgccagGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGACGCTGACAGTGACCTAGAGGAGGAGATCCAGGATGTCCCCAGGGGTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGgttgcttgctattcactcacattatattctttactacactacaatataggactactagtatattattactacacattgaaaccctactgtagtttgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG