1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCCAGTTATTGTTCGGTTCTCCACAGTCGTGCATGAGCGTGGAAGCCCTGAGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctctttcgcttctttctttcataggattgtaggagggagacattcagtataatgtattcttcaagcataaggctgtagaatcaaatgtctagt...
species | Oryza sativa |
transcript | LOC_Os06g51150.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTNTTTTTTATCCGAGATEST: gi|29657922|gb|CB654197.1|CB654197
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58692972|gb|CK081659.1|CK081659
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|29628364|gb|CB633375.1|CB633375
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|117240442|gb|CT842802.1|CT842802
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58663995|gb|CK052681.1|CK052681
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58678433|gb|CK067120.1|CK067120
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: GACACTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTCCGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|29623121|gb|CB628132.1|CB628132
genomic: GACA-TTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|29619347|gb|CB624359.1|CB624359
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58669083|gb|CK057769.1|CK057769
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAAEST: gi|29672050|gb|CB668325.1|CB668325
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGA-
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58694437|gb|CK083124.1|CK083124
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|38474000|gb|CF958132.1|CF958132
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58608999|gb|CK037032.1|CK037032
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTCGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58598738|gb|CK009266.1|CK009266
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|33678219|gb|CF306458.1|CF306458
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58606081|gb|CK034114.1|CK034114
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|33678440|gb|CF306679.1|CF306679
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58602279|gb|CK012807.1|CK012807
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: ACGTGGTTTTGCTGTCGAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAAEST: gi|58690037|gb|CK078724.1|CK078724
genomic: ACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAG-A
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58674207|gb|CK062893.1|CK062893
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58695135|gb|CK083822.1|CK083822
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGEST: gi|33793425|gb|CF322592.1|CF322592
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTG
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58613055|gb|CK040767.1|CK040767
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTT-ATCCGAGATEST: gi|58666199|gb|CK054885.1|CK054885
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58692263|gb|CK080950.1|CK080950
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58601731|gb|CK012259.1|CK012259
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|33674814|gb|CF303053.1|CF303053
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58674842|gb|CK063529.1|CK063529
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTCCTTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATEST: gi|58671674|gb|CK060360.1|CK060360
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTEST: gi|29616047|gb|CB621059.1|CB621059
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCT
EST: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAG GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
genomic: AGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctc ... tgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAGTTATTGTTCGGTTCTCCACAGTCGTGCATGAGCGTGGAAGCCCTGAGACATTGAGGGATCCACGTGGTTTTGCTGTCAAGTTTTACACTAGAGAGgtacttgctctttcgcttctttctttcataggattgtaggagggagacattcagtataatgtattcttcaagcataaggctgtagaatcaaatgtctagt
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