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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCTGGTCCATACGGAACTTTCGTCGGGGTTTATGATGGACATGGTGGCCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgatactgacagtatgcactagtgttgttttgcactacttccatactgtgttttagagcaattccatgaccatttcattcttccatggcttatattgcag

Basic information

species Oryza sativa
transcript LOC_Os06g50380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g50380.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G151254_T02 (Zea mays), 5'ss of exon 2
GACTCTGGTCCATACGGAACTTTCGTCGGGGTTTATGATGGACATGGTGGCCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaa-ttgata----ctgacagtatgcactagtgttgtttt---------gcactacttccatactgtgttttaga---gcaattccatgaccat-ttcattcttccatggcttatattgcag
|| ||||| ||||| || |||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| || |||||  ||||||||||||| ||| ||     | |   | |||| |||   | ||           ||||||  ||   | |  | |||      |||  |  | ||     | |||| || |||||||| ||||  ||
GATTCTGGACCATATGGCACTTTCGTTGGTGTTTACGATGGGCATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgtgcagtagcactattcccgtttcttagcactatatctgcatttggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatt-tag

upper sequence: LOC_Os06g50380.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G069970_T02 (Zea mays), 5'ss of exon 2
GACTCTGGTCCATACGGAACTTTCGTCGGGGTTTATGATGGACATGGTGGCCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaa-ttgata----ctgacagtatgcactagtgttgtttt---------gcactacttccatactgtgtttt--------------agagcaattccatgaccatttcattcttccatggcttatattgcag
|| || || ||||| || ||||| || || ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || |||||  ||||||||||||| ||| ||     | |   |  ||| |||  || ||           | ||||  ||   | |  | |||               |||  || |  ||| || | ||||||| |||||||| ||||  ||
GATTCCGGACCATATGGCACTTTTGTTGGCGTTTACGATGGACATGGTGGTCCAGAGACGGCCTGCTATATCAATGATCATCTCTTCCAGAATCTGAAAAgtaacttgctaacctttaaatctgagcagtagcattattcccatttcttagtactatatctggatttggctttcagtttgcacttaaggagtgatccagtgatcaatccattctttcatggcttgtatt-tag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673876|gb|CK062562.1|CK062562
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATGTCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|58676764|gb|CK065451.1|CK065451
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATGTCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|58662521|gb|CK051207.1|CK051207
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTCTTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATGTCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|29646160|gb|CB651167.1|CB651167
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|58653120|gb|CK041800.1|CK041800
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATGTCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|88298570|gb|CI563565.1|CI563565
EST:     CCAAAAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         NGTTTGCATCTGAAACAGAATTCGATATCTGCTGATGTGCTGAAANAAAGC
genomic: CCAGA-GACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAA-CAGAATTCGATATCTGCTGATGTGCTGAAG-AAAGC
EST: gi|58663964|gb|CK052650.1|CK052650
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATGTCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|117240320|gb|CT842746.1|CT842746
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATGTCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|33793893|gb|CF322835.1|CF322835
EST:     CGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
genomic: CGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|33653808|gb|CF276422.1|CF276422
EST:     CCCAGAGACGGCTTACTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATATCTGGCTGATGGTGCTGAAGAAAGC
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTG-CTGATG-TGCTGAAGAAAGC
EST: gi|29679794|gb|CB676069.1|CB676069
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|58612365|gb|CK040077.1|CK040077
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATGTCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|29664135|gb|CB660410.1|CB660410
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|29677202|gb|CB673477.1|CB673477
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATATCTGCTGATGTGCTGAAGAAAGCAT
EST: gi|33653665|gb|CF276279.1|CF276279
EST:     CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAA                         GGTTTGCATCTGAACAGAATTCGATAT
genomic: CCCAGAGACGGCTTGCTATATCAACGATCACCTATTCCACCATCTGAAAAgtaattgata ... tatattgcagGGTTTGCATCTGAACAGAATTCGATAT