1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAGgtctagtaatagcatgattaatgctttcctggagatagtttccatcgcatgatggaaaaccttttgttgattgcggctattttgctctgattttctaaaa...
species | Oryza sativa |
transcript | LOC_Os06g39344.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAAEST: gi|88690849|gb|CI734928.1|CI734928
genomic: GGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAGgtctagtaat ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
EST: GGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAAEST: gi|58695138|gb|CK083825.1|CK083825
genomic: GGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAGgtctagtaat ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
EST: GGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
genomic: GGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAGgtctagtaat ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAGgtctagtaatagcatgattaatgctttcctggagatagtttccatcgcatgatggaaaaccttttgttgattgcggctattttgctctgattttctaaaa
- - - - TGAAGA
- - - - - AAGAGA