1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacctttgtcatgtgtgtttttgatctgattttacttttaaagctcatatttcttttctatttgttgttcaacagtttatgtgacagtataacgg...
species | Oryza sativa |
transcript | LOC_Os06g39344.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGTGCAAAAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAAEST: gi|58612979|gb|CK040691.1|CK040691
genomic: TTGTGCAAAAGgtttttacct ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
EST: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAAEST: gi|29664859|gb|CB661134.1|CB661134
genomic: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacct ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
EST: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAAEST: gi|29658499|gb|CB654774.1|CB654774
genomic: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacct ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
EST: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAAEST: gi|88367425|gb|CI566391.1|CI566391
genomic: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacct ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
EST: GTGTTGCACCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG GTCTTCACAGCAGAGTACTCTTTGATT-GTAAGATTCATGAGTATACAAAAEST: gi|38470297|gb|CF954428.1|CF954428
genomic: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacct ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
EST: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG GTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
genomic: GTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacct ... ttgttttcagGTCTTCACAGCAGAGTACTCTTTGATTTGTAAGATTCATGAGTATACAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacctttgtcatgtgtgtttttgatctgattttacttttaaagctcatatttcttttctatttgttgttcaacagtttatgtgacagtataacgg
- - - - - - - - - - - - - - - - - - - - - AGAGCA