1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATATGTCATGCTTCCAAGGGCTACTATTCTGCCCTGAAGCATCTTCATTACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAGgttcgtagctgtctctagtatttattatataatgaattatttgatagttgtatttattaagctttgatgcattaggcaatttcagatctatctttttgatgaatgcattgttttattgtcctttgcaagaatcttgcag
species | Oryza sativa |
transcript | LOC_Os06g36740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAG TTAGGAGCAGCTCCAGTTTCACCAAGCAGTCCTGTGGCATCTGTTGATGAGEST: gi|29657096|gb|CB653371.1|CB653371
genomic: TACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAGgttcgtagct ... aatcttgcagTTAGGAGCAGCTCCAGTTTCACCAAGCAGTCCTGTGGCATCTGTTGATGAG
EST: TACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAG TTAGGAGCAGCTCCAGTTTCACCAAGCAGTCCTGTGGCATCTGTTGATGAGEST: gi|58684782|gb|CK073469.1|CK073469
genomic: TACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAGgttcgtagct ... aatcttgcagTTAGGAGCAGCTCCAGTTTCACCAAGCAGTCCTGTGGCATCTGTTGATGAG
EST: TACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAG TTAGGAGCAGCTCCAGTTTCACCAAGCAGTCCTGTGGCATCTGTTGATGAG
genomic: TACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAGgttcgtagct ... aatcttgcagTTAGGAGCAGCTCCAGTTTCACCAAGCAGTCCTGTGGCATCTGTTGATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTCATGCTTCCAAGGGCTACTATTCTGCCCTGAAGCATCTTCATTACTGCTGCATAATTTTTGTATTTACCATATCAGCCCCCCAGGACATGAGgttcgtagctgtctctagtatttattatataatgaattatttgatagttgtatttattaagctttgatgcattaggcaatttcagatctatctttttgatgaatgcattgttttattgtcctttgcaagaatcttgcag
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