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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCCAGAGCCGTGTACAGTGATGCAGATGTGTACCTCCTAGATGATCCTTTCAGCGCGGTCGATGCGCACACCGCTGCGGTTCTGTTCTATGTAAGAGgtgctccttgacctgcatccatggatgcactccctgatgaaaaaaaagttctaatcagtggcaatgttcttgctggattgtgtaatgacag

Basic information

species Oryza sativa
transcript LOC_Os06g36650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36650.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 2
-------CTGGCCAGAGCCGTGTACAGTGATGCAGATGTGTACCTCCTAGATGATCCTTTCAGCGCGGTCGATGCGCACACCGCTGCGGTTCTGTTCTATGTA------AGAGgtgctccttgacctgcatccatggatgcactccctgatgaaaaaaaagttctaatcagtggcaatgttcttgctggattgtgtaatgacag
       |||||  ||||||| ||||||||||||||||| || || || ||||| || ||||| || || |||||||| |||||||| || || |||||||||      |||   |||||| || ||  ||||||| |     |   |  |       | ||  || | || | |||||||| ||| |                
GATTCAGCTGGCTCGAGCCGTCTACAGTGATGCAGATGTTTATCTACTGGATGACCCATTCAGTGCAGTTGATGCGCATACCGCTGCAGTCCTTTTCTATgtatgctgcagataagctcctcgaactttatccatgaa-atggtatgttttctgcttcacgtagtactaag-gccaatgttcatgcag----------------

upper sequence: LOC_Os06g36650.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA08G20770.1 (Glycine max), 5'ss of exon 3
-------CTGGCCAGAGCCGTGTACAGTGATGCAGATGTGTACCTCCTAGATGATCCTTTCAGCGCGGTCGATGCGCACACCGCTGCGGTTCTGTTCTATGTAAGAGgt----gctccttgacctgcatccatggatgcactccctgatgaaaaaaaagttctaatcagtggcaatgttcttgctggattgtgtaa-tgacag-
       || ||  | || || |||| ||| || ||  | || ||||| ||||| ||||||||||| || ||||| ||||| |||||  |||||||| |||||||| |      ||  | ||     |  | |  |  ||| |     |      |||      |    || | | |||  ||        |  || | | || 
GATTCAACTAGCTCGTGCAGTCTACAATGACGCTGACATCTATCTCCTCGATGACCCTTTCAGCGCAGTTGATGCTCACACTGCTGCTATTCTGTTCAATgtaagaagctatcacttttagattcttaaacttcaacacacacttgtctcggttcaaaac----acagttgtctaagtttatgaaaagaaattcaactaatagc