1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAgtatgtttctgatattttaatattaattacatttgtgagaaaacggactttctcttttcttatatcttgaaaacaaacaagcaaagttggttgtcttgtc...
species | Oryza sativa |
transcript | LOC_Os06g35030.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAA GTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCEST: gi|218500791|gb|FG960831.1|FG960831
genomic: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAgtatgtttct ... gcacttatagGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCC
EST: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAA GTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCEST: gi|396941304|gb|HO188513.1|HO188513
genomic: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAgtatgtttct ... gcacttatagGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCC
EST: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAA GTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCEST: gi|29664747|gb|CB661022.1|CB661022
genomic: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAgtatgtttct ... gcacttatagGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCC
EST: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAA GTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCC
genomic: GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAgtatgtttct ... gcacttatagGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAgtatgtttctgatattttaatattaattacatttgtgagaaaacggactttctcttttcttatatcttgaaaacaaacaagcaaagttggttgtcttgtc
- - - - - AGAAGC
- - - - - - - - - CTGAAG