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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttattggcatatataattctgtcaataatctctgcgtgtctctgttcatatgaaaaagttttatctaattagttagggattcaacctgcactcc...

Basic information

species Oryza sativa
transcript LOC_Os06g15360.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629490|gb|CB634499.1|CB634499
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|58682592|gb|CK071279.1|CK071279
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|58665658|gb|CK054344.1|CK054344
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88305062|gb|CI651993.1|CI651993
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCA
EST: gi|88735625|gb|CI759133.1|CI759133
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCC
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCC
EST: gi|33687245|gb|CF315484.1|CF315484
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|2428184|gb|C72647.1|C72647
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGA-CACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29643232|gb|CB648239.1|CB648239
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|33654535|gb|CF277149.1|CF277149
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|58598650|gb|CK009178.1|CK009178
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGA
EST: gi|29655833|gb|CB652108.1|CB652108
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|33689698|gb|CF317937.1|CF317937
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88364556|gb|CI612371.1|CI612371
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGC
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGC
EST: gi|33656015|gb|CF278629.1|CF278629
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88351910|gb|CI625910.1|CI625910
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGT
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGT
EST: gi|58670896|gb|CK059582.1|CK059582
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88726457|gb|CI750112.1|CI750112
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGT
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGT
EST: gi|29631166|gb|CB636175.1|CB636175
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29669284|gb|CB665559.1|CB665559
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCACTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29636049|gb|CB641058.1|CB641058
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29673854|gb|CB670129.1|CB670129
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|218502296|gb|FG962509.1|FG962509
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88456164|gb|CI567804.1|CI567804
EST:     AGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCCAG                         TCTCAAACAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCAC-TC-ACA
genomic: AGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCC-AGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACA
EST: gi|58586179|gb|CF984487.1|CF984487
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88331149|gb|CI639560.1|CI639560
EST:     AGCATCATCAAGTGGAGCTNTAAA-TGCTTCAAAGGCACCTGTGAGCCAG                         TCTAAACCAGCA
genomic: AGCATCATCAAGTGGAGCT-TCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCA
EST: gi|88430972|gb|CI571962.1|CI571962
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCAC
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCAC
EST: gi|700253|gb|D46544.1|D46544
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88316471|gb|CI621710.1|CI621710
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGGCTCAGTTGCAAGAACAACACCTC
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTC
EST: gi|86851128|gb|CI311346.1|CI311346
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGA
EST: gi|86904514|gb|CI308724.1|CI308724
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGC
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGC
EST: gi|88299070|gb|CI570040.1|CI570040
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC-AG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29657664|gb|CB653939.1|CB653939
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|117226238|gb|CT846174.1|CT846174
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|58611993|gb|CK039705.1|CK039705
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29670071|gb|CB666346.1|CB666346
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29668712|gb|CB664987.1|CB664987
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCGCCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88288630|gb|CI663419.1|CI663419
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTG
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTG
EST: gi|29658464|gb|CB654739.1|CB654739
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACTA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29632660|gb|CB637669.1|CB637669
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29643186|gb|CB648193.1|CB648193
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCTGAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCTGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29660320|gb|CB656595.1|CB656595
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88336977|gb|CI627057.1|CI627057
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAA
EST: gi|58596519|gb|CK007047.1|CK007047
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|29631164|gb|CB636173.1|CB636173
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|58667186|gb|CK055872.1|CK055872
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAG                         TCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAACTCCAGTTGCCTCAGTTGCAAGAACACCACCTCCACAA
EST: gi|88387585|gb|CI585288.1|CI585288
EST:     AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCAACTGTGAGCCAG                         TCTCAACCAGCAAC
genomic: AAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttat ... tttgcactagTCTCAACCAGCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGgtaattttattggcatatataattctgtcaataatctctgcgtgtctctgttcatatgaaaaagttttatctaattagttagggattcaacctgcactcc

- - - - - - -  AGTGGA
- - - - - - - - GTGGAG
- - - - - - - - - GGAGCT
- - - - - - - - -  GAGCTT