1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgaccttacagttggtagtaaataccatggttctgaattcgcactatgtttgtcctcattgatgtggaagttgtctatacctctttttgatcatac...
species | Oryza sativa |
transcript | LOC_Os06g10880.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|87029295|gb|CI276563.1|CI276563
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: GTGGAAATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCEST: gi|86258557|gb|CI064910.1|CI064910
genomic: GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
EST: ATGATACAGAAGCAAAATGATGAG GTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
genomic: ATGATACAGAAGCAAAATGATGAGgtaatgacct ... gattttgcagGTCATGGAGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAAATGATACAGAAGCAAAATGATGAGgtaatgaccttacagttggtagtaaataccatggttctgaattcgcactatgtttgtcctcattgatgtggaagttgtctatacctctttttgatcatac
- - - - - - AGAAGC
- - - - - - - AAGCAA