1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGGTTTCCAAGGGGCACAAAATGTTGCTATGTTGAACAAAACAAGTCTTCCAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatcaccaattcaccacatatacataattgccatattatctgcttcattgaattattttttgctcttttggcaatccag
species | Oryza sativa |
transcript | LOC_Os06g09370.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACAT GATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTCEST: gi|58608306|gb|CK036339.1|CK036339
genomic: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatca ... ggcaatccagGATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTC
EST: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACAT GATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTCEST: gi|58591002|gb|CF989310.1|CF989310
genomic: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatca ... ggcaatccagGATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTC
EST: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACAT GATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTCEST: gi|58602916|gb|CK013444.1|CK013444
genomic: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatca ... ggcaatccagGATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTC
EST: CAAATGGGAATCCCTCGCTGTTTGATGATGCTGCCATAGCATCACTACAT GATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTCEST: gi|27728135|gb|CB035355.1|CB035355
genomic: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatca ... ggcaatccagGATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTC
EST: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACAT GATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTCEST: gi|58603374|gb|CK013902.1|CK013902
genomic: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatca ... ggcaatccagGATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTC
EST: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACAT GATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTC
genomic: CAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatca ... ggcaatccagGATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTTTCCAAGGGGCACAAAATGTTGCTATGTTGAACAAAACAAGTCTTCCAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATgtaatgatcaccaattcaccacatatacataattgccatattatctgcttcattgaattattttttgctcttttggcaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC