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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaaatctgtactaagcacaatatttgagcataacgtatttcccaccattatctggggagttgttgggctgagtcgtcattcaaacttaagaga...

Basic information

species Oryza sativa
transcript LOC_Os06g09330.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g09330.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G116919_T01 (Zea mays), 5'ss of exon 6
TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaaatctgtactaagcacaatatttgagca-taacgtatttcccaccattatctggggagttgttgggctgagtcgtcattcaaacttaagaga-
||||||| |||||||||||||| ||||||||||| ||||||||   | | | |  ||   |||  | ||  ||| || ||| || |||      |  |  | |       || |    | |  | | |  |       | | 
TTCATCCTGAATCTTGGAATCCGATGTGGTCTGTTGCAAGgtacacatataccaataactagcttattacatgaacagtaatgtttttttgg--aagacatagcatacctttagcacaaattcttaatttactgcggcaaat

upper sequence: LOC_Os06g09330.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G177276_T01 (Zea mays), 5'ss of exon 6
TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaaatctgtactaagcacaatatttgagcataacgtatttccca---ccattatctgggg--agttgttgggctg--agtcgtcattcaaacttaagaga
||||||| |||||||||||||| ||||||||||| |||||||||| |||    | ||   |||| | || ||||   ||| || |||       ||||  | |      |||| ||  |||      |    | || ||| ||    
TTCATCCTGAATCTTGGAATCCAATGTGGTCTGTTGCAAGgtatgcaca----tttaactagcatattacttgaatgtaatgtgtttttggaagccatagtgtacctttagtttttcagctactgtacaatgtacatactcaaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87015788|gb|CI279540.1|CI279540
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|87010686|gb|CI312378.1|CI312378
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86495662|gb|CI138295.1|CI138295
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86599367|gb|CI251325.1|CI251325
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86514651|gb|CI157284.1|CI157284
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|86855623|gb|CI268950.1|CI268950
EST:     ATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: ATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|88206366|gb|CI206215.1|CI206215
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|87035120|gb|CI189743.1|CI189743
EST:     AGTGACTTTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: AGTGACTTTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG
EST: gi|87035496|gb|CI190118.1|CI190118
EST:     TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG                         CATTCTCACGGGCCTCCTTTCATTCATG
genomic: TTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAGgtatgtacaa ... cgttctgcagCATTCTCACGGGCCTCCTTTCATTCATG