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GCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAGgtaatcaacttcccagatgaagattacctccttaaaacttttgccggcagtaactttgttttttttataaaaaaaaaacgtaatgcattcagtaacattt...
species | Oryza sativa |
transcript | LOC_Os06g06350.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCCAAG GGTGAAAGCTGTGGCATCTACGGCGCEST: gi|88331869|gb|CI642094.1|CI642094
genomic: CGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGC-AAGgtaatcaact ... caaatttcagGGTGAAAGCTGTGGCATCTACGGCGC
EST: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAG GGTGAAAGCTGTGGCATCTACGGCGCAAACEST: gi|88342452|gb|CI645974.1|CI645974
genomic: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAGgtaatcaact ... caaatttcagGGTGAAAGCTGTGGCATCTACGGCGCAAAC
EST: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAG GGTGAAAGCTGTGGCATCTACGGCGCAAACTGCCCTGAATGGATCATCAGCEST: gi|88309327|gb|CI655335.1|CI655335
genomic: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAGgtaatcaact ... caaatttcagGGTGAAAGCTGTGGCATCTACGGCGCAAACTGCCCTGAATGGATCATCAGC
EST: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAG GGTGAAAGCTGTGGCATCTACGGCGCAAACTGCCCTGAATGGATCATCAGCEST: gi|88325766|gb|CI648211.1|CI648211
genomic: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAGgtaatcaact ... caaatttcagGGTGAAAGCTGTGGCATCTACGGCGCAAACTGCCCTGAATGGATCATCAGC
EST: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAG GGTGAAAGCTGTGGCATCTACGGCGCAAACTGCCC
genomic: ACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAGgtaatcaact ... caaatttcagGGTGAAAGCTGTGGCATCTACGGCGCAAACTGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATGAAACTTGCTGCCTCCATTAGCAAGTCAGGAATCAGCAAGgtaatcaacttcccagatgaagattacctccttaaaacttttgccggcagtaactttgttttttttataaaaaaaaaacgtaatgcattcagtaacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa