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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGTTGAGACTGGAAAAAATGACGGATCTTTGAGTGATGTGGATGCGATGAAGgtgcacaacttattaaattcttattgatttctgttgagattgttggctaggagaaatctgactagttttaccttcag

Basic information

species Oryza sativa
transcript LOC_Os06g06014.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38478126|gb|CF962259.1|CF962259
EST:     TTGAGACTGGAAAAAATGACGGATCTTTGACTGATGTGGATGCGATGAAG                         GAAAATTCCAATGTGGGGAAGAACAGCTCTTCAATTAATGACAATAATGGA
genomic: TTGAGACTGGAAAAAATGACGGATCTTTGAGTGATGTGGATGCGATGAAGgtgcacaact ... ttaccttcagGAAAATTCCAATGTGGGGAAGAACAGCTCTTCAATTAATGACAATAATGGA
EST: gi|88225241|gb|CI225157.1|CI225157
EST:     TTTGAGTGATGTGGATGCGATGAAG                         GAAAATTCCAATGTGGGGAAGAACAGCTCTTCAATTAATGACAATAATGGA
genomic: TTTGAGTGATGTGGATGCGATGAAGgtgcacaact ... ttaccttcagGAAAATTCCAATGTGGGGAAGAACAGCTCTTCAATTAATGACAATAATGGA