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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCACTGTCAGGCATCTTTCTTCAGCAGTTGAGACATTTCCAAATTCATTCACTAGTTTCTCAACTGGTCAACCTTGCATCAGTACATCGCCCAAGCAGgttagtcaatcaatcaaattatgctttcttatgcctatagtaatgatgttatgtgctccccatccaatagcaacatttgatcgacacctttcttttggcattttatctacgactaaactgctttacggtttgttttattcag

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58680419|gb|CK069106.1|CK069106
EST:     TCACTAGTTTCTCAACTGGTCAACCTTGCATCAGTACATCGCCCAAGCAG                         TGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC
genomic: TCACTAGTTTCTCAACTGGTCAACCTTGCATCAGTACATCGCCCAAGCAGgttagtcaat ... ttttattcagTGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC
EST: gi|58671154|gb|CK059840.1|CK059840
EST:     TCACTAGTTTCTCAACTGGTCAACCTTGCATCAGTACATCGCCCAAGCAG                         TGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC
genomic: TCACTAGTTTCTCAACTGGTCAACCTTGCATCAGTACATCGCCCAAGCAGgttagtcaat ... ttttattcagTGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC
EST: gi|88730217|gb|CI753832.1|CI753832
EST:     TCACTAGTTTCTCAACTGGTCAACCTTGCATCAGTACATCGCCCAAGCAG                         TGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC
genomic: TCACTAGTTTCTCAACTGGTCAACCTTGCATCAGTACATCGCCCAAGCAGgttagtcaat ... ttttattcagTGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC
EST: gi|33381043|gb|CF196386.1|CF196386
EST:     GTCAACCTTGCATCAGTACATCGCCCAAGCAG                         TGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC
genomic: GTCAACCTTGCATCAGTACATCGCCCAAGCAGgttagtcaat ... ttttattcagTGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGC