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TTGCGAAGAGCGCATGCTATCCTCGGATGCGAGCGTGGGACTGTTGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATAgtatgtgttctctctttattcctttctgatgtctcaataaacttttgttgttcagaaagaaaaaggaacttcctttcgtcatacaaatatttgggcatca...
species | Oryza sativa |
transcript | LOC_Os06g01630.5 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATA CTGTATCAAGTTCCAACCTTCATCCAGAGTATGCNNNNNNNNTTGGAGGATEST: gi|58683216|gb|CK071903.1|CK071903
genomic: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATAgtatgtgttc ... cctgttgcagCTGTATCAAGTTCCAACCTTCATCCAGAGTATGCAAAAAAAATTGGAGGAT
EST: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATA CTGTATCAAGTTCCAACCTTCATCCAGAGTATGCNNNNNNNNTTGGAGGATEST: gi|88299497|gb|CI574610.1|CI574610
genomic: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATAgtatgtgttc ... cctgttgcagCTGTATCAAGTTCCAACCTTCATCCAGAGTATGCAAAAAAAATTGGAGGAT
EST: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATA CTGTATCAAGTTCCAACCTTCATCCAGAGTATGCNNNNNNNNTTGGAGGATEST: gi|33659417|gb|CF282030.1|CF282030
genomic: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATAgtatgtgttc ... cctgttgcagCTGTATCAAGTTCCAACCTTCATCCAGAGTATGCAAAAAAAATTGGAGGAT
EST: GTAAAGGAAGATA CTGTATCAAGTTCCAACCTTCATCCAGAGTATGC-NNNNNNNTTGGAGGATEST: gi|58610517|gb|CK038229.1|CK038229
genomic: GTAAAGGAAGATAgtatgtgttc ... cctgttgcagCTGTATCAAGTTCCAACCTTCATCCAGAGTATGCAAAAAAAATTGGAGGAT
EST: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATA CTGTATCAAGTTCCAACCTTCATCCAGAGTATGCNNNNNNNNTTGGAGGAT
genomic: TGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATAgtatgtgttc ... cctgttgcagCTGTATCAAGTTCCAACCTTCATCCAGAGTATGCAAAAAAAATTGGAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCGAAGAGCGCATGCTATCCTCGGATGCGAGCGTGGGACTGTTGTTCGTCACTTCTCATCCAGCACTTGCTCCTCTCTTGTAAAGGAAGATAgtatgtgttctctctttattcctttctgatgtctcaataaacttttgttgttcagaaagaaaaaggaacttcctttcgtcatacaaatatttgggcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa