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GTTTTGGACCTGCTATGTACTGTTCCGAGAGTATGAGATAATTACAACGATGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatcttgtcaactttgcaaatcccctctctatttagtaccaacatgtttacattggatccacaagaagggtaaaaaattgtaatattaatggactg...
species | Oryza sativa |
transcript | LOC_Os05g51630.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACA GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCEST: gi|29683379|gb|CB679654.1|CB679654
genomic: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatctt ... tttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
EST: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACA GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCEST: gi|58693629|gb|CK082316.1|CK082316
genomic: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatctt ... tttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
EST: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACA GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
genomic: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatctt ... tttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGGACCTGCTATGTACTGTTCCGAGAGTATGAGATAATTACAACGATGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatcttgtcaactttgcaaatcccctctctatttagtaccaacatgtttacattggatccacaagaagggtaaaaaattgtaatattaatggactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat