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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgctcgctcctgcccctgctgcctctcagcttagcgattccaactcttttgctaaagctctctacctcttccttcctttgcttcttcttcttttctag

Basic information

species Oryza sativa
transcript LOC_Os05g51530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G144372_T01 (Zea mays), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtc-gctcgctcgctcctgcccctgctgcctct-cagcttagcgattccaactcttttgctaaagctctctacctcttccttcctttgcttcttcttcttttctag
||||||||||||||||||||||||| || ||||||||||| || |||||||||||| | |||||||| || ||||| || ||||||||||||||||||||||| |||  ||  || ||  |  | | |||    | ||  |||   ||  || | |      || || |     |    |  | ||                    
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGAGTGGGACCCTCACCGTCGATGGCGTTCCTGTCGACACCTACCTCACCAGgtctgctgcctaactgctatctgtccagcccaggctgcccagctgatcggacgcctaaaaccaaccttttgtgttggctccgcgttcag-----------------

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgctcgctcctgcccctgctgcctctcagcttagcgattccaactcttttgctaaagctctctacctcttccttcctttgcttcttcttcttttctag---
|||||||||||||||||||||| || || ||||||||||| || ||||| || ||||| |||||||| || ||||| ||||||||||||||||||||||||||    |   ||  || ||  |   |    |    ||| |     ||  | | | ||| ||   ||       ||  ||   | ||   | | |   | |  |   
ACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcag--gtctgccgctacctgtctggtggtttg--ttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggtcgcgcgtgcctacctgcatgcag

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgctcgctcctgcccctgctgcctctcagcttagcgattccaactcttttgctaaagctctctacctcttccttcctttgcttcttcttcttttctag
||||||||||||||||||||||||| || ||||||||||| || |||||||  ||| | |||||||| ||||||||||||||||||||||||||||| |||||    ||   || |   |||         || | |  | |   ||   ||   |   ||   ||| |     |  |   |   |                  
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaacccca-------tcggatgggtg--ccctgttcagcttaaaagcttctgtgttgatcgcgcgcgcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88299480|gb|CI574593.1|CI574593
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAAC
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAAC
EST: gi|88407461|gb|CI586302.1|CI586302
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGAT
EST: gi|66912614|gb|CX099462.1|CX099462
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATG
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATG
EST: gi|2427977|gb|C72440.1|C72440
EST:     GTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGNA-AC-TACCTAACCAG                         GGTTT-TGTTGGATGAGGG-AAATACCCAACGATGTAACCG
genomic: GTGGGGCTCTCACCGTTGACGGCGTCCCCGTCG-ACACCTACCTCACCAGgtcgctcgct ... tcttttctagG-TTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCG
EST: gi|58664797|gb|CK053483.1|CK053483
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|29656670|gb|CB652945.1|CB652945
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|29662007|gb|CB658282.1|CB658282
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58599761|gb|CK010289.1|CK010289
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58595941|gb|CK006469.1|CK006469
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|88416976|gb|CI573691.1|CI573691
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGA
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGA
EST: gi|29612869|gb|CB617882.1|CB617882
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|88443572|gb|CI597039.1|CI597039
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCAACGCTC
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTC
EST: gi|88432524|gb|CI567563.1|CI567563
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACANCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58667113|gb|CK055799.1|CK055799
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58666270|gb|CK054956.1|CK054956
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|88434036|gb|CI586914.1|CI586914
EST:     GTGGGGCTCTCACCGTTGACGGCGTCCCCGCTCGACACCTACCTCACCAG                         GT--GTGTGGGATGAGGGCAAATACC
genomic: GTGGGGCTCTCACCGTTGACGGCGTCCCCG-TCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACC
EST: gi|218479849|gb|FG959490.1|FG959490
EST:     GCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: GCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58654107|gb|CK042787.1|CK042787
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGG
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGG
EST: gi|88389857|gb|CI626626.1|CI626626
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|88426951|gb|CI601912.1|CI601912
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCC-GTCGACACCTACCTCACCAG                         GTTTGTGTGGGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGAT
EST: gi|218498003|gb|FG943208.1|FG943208
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|33653619|gb|CF276233.1|CF276233
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58686384|gb|CK075071.1|CK075071
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58600826|gb|CK011354.1|CK011354
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|29613101|gb|CB618114.1|CB618114
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58606956|gb|CK034989.1|CK034989
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58681691|gb|CK070378.1|CK070378
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCCAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58660134|gb|CK048814.1|CK048814
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTAACTCACCAG                         GTTTGTGTGGGATGAG
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAG
EST: gi|58678473|gb|CK067160.1|CK067160
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACC
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACC
EST: gi|86906056|gb|CI292587.1|CI292587
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGG
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGG
EST: gi|58596246|gb|CK006774.1|CK006774
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58688997|gb|CK077684.1|CK077684
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|88433997|gb|CI586875.1|CI586875
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCC-GTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAAT
EST: gi|88392446|gb|CI612920.1|CI612920
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|25802832|gb|CA758793.1|CA758793
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|88360528|gb|CI608380.1|CI608380
EST:     AGTGGGGCTCTCAACGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCCTCAAGGAGA
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGC-TCAAGGAGA
EST: gi|33664188|gb|CF295155.1|CF295155
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|27578007|gb|CB000702.1|CB000702
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|58660817|gb|CK049497.1|CK049497
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
EST: gi|88372240|gb|CI619570.1|CI619570
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGC
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGC
EST: gi|29613962|gb|CB618975.1|CB618975
EST:     AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAG                         GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT
genomic: AGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 65 (upstream exon), 74 (downstream exon)
Score: 39

ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgct ... tcttttctagGTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGATTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG




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