1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CTTGCGAGACAAGGCTCAAGTGGAGCAATTGCTTCGTTACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattcttttgtcgtttaccaccaagttttgtaaaatagcttgttggtgaaccttgcctaacttcagttatataactcaatgcag
species | Oryza sativa |
transcript | LOC_Os05g51490.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAA GTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCAEST: gi|88359820|gb|CI622510.1|CI622510
genomic: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattc ... ctcaatgcagGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCA
EST: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAA GTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTTEST: gi|88411328|gb|CI564449.1|CI564449
genomic: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattc ... ctcaatgcagGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTT
EST: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAA GTTCCCATTCATTGCTTGTGACATATTTACCTGTGAAATTGACATCATCTTEST: gi|58607323|gb|CK035356.1|CK035356
genomic: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattc ... ctcaatgcagGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTT
EST: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAA GTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTTEST: gi|29669887|gb|CB666162.1|CB666162
genomic: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattc ... ctcaatgcagGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTT
EST: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAA GTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTTEST: gi|88407509|gb|CI586350.1|CI586350
genomic: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattc ... ctcaatgcagGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACATCATCTT
EST: TACATCGTGGAAGAAGTAC-AGAAGAT-CTGAAAAGAAACGTTCTTTTAA GTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACAT
genomic: TACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattc ... ctcaatgcagGTTCCCATTCATTGCTTGTGAGATATTTACCTGTGAAATTGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCGAGACAAGGCTCAAGTGGAGCAATTGCTTCGTTACATCGTGGAAGAAGTACCAGAAGATTCTGAAAAGAAACGTTCTTTTAAgtatgcattcttttgtcgtttaccaccaagttttgtaaaatagcttgttggtgaaccttgcctaacttcagttatataactcaatgcag
- - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA