1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCGAGCGCCCACAGGAGCGTGTTGACTCAGAATTCGGATGTCGCTGATTTGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaagggagctaacactagctgctgtgtgtttttacttcaatctttcagcacaagcacctttttctctttctctttttttttttgctaaaaaaatctggttacatttttgtgtag
species | Oryza sativa |
transcript | LOC_Os05g51190.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAG ATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACTEST: gi|58681849|gb|CK070536.1|CK070536
genomic: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaag ... ttttgtgtagATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACT
EST: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAG ATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACTEST: gi|58679423|gb|CK068110.1|CK068110
genomic: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaag ... ttttgtgtagATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACT
EST: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAG ATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACTEST: gi|58662467|gb|CK051153.1|CK051153
genomic: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaag ... ttttgtgtagATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACT
EST: GTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAG ATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACTEST: gi|38476078|gb|CF960211.1|CF960211
genomic: GTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaag ... ttttgtgtagATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACT
EST: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAG ATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACTEST: gi|86877342|gb|CI311548.1|CI311548
genomic: TGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaag ... ttttgtgtagATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACT
EST: TGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAG ATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACT
genomic: TGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaag ... ttttgtgtagATAATTACAAAACTTAAGGTTATCCCTGCATCTCCTGGTGGTGTGGCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGAGCGCCCACAGGAGCGTGTTGACTCAGAATTCGGATGTCGCTGATTTGTGTAATCAAATGATGCTGAAACTTCGTGATTTTTATGATCCGAACAAGgtatcaaaagggagctaacactagctgctgtgtgtttttacttcaatctttcagcacaagcacctttttctctttctctttttttttttgctaaaaaaatctggttacatttttgtgtag
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