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GATAATCGACAGGACACACAGTTTCAGAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttattatttccacaagtattttgtaaattgtaatcttagttcttttttatgagagagttgtggaagttccattgcctcactaatttacaaaacaat...
species | Oryza sativa |
transcript | LOC_Os05g50370.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCEST: gi|13420889|gb|AU174979.1|AU174979
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCEST: gi|13420888|gb|AU174978.1|AU174978
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATCEST: gi|218480068|gb|FG963241.1|FG963241
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
EST: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAG GGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
genomic: GAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttatta ... ttaactgtagGGCTTGAGGTTGAATCAGCTTTAAGGCATAAAGCAAGATTAGAGAGGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAATCGACAGGACACACAGTTTCAGAGAGCGGTTTCCAGTAACTTAATGAGAAACCCAGATTCATATAGCAAAGgtacttattatttccacaagtattttgtaaattgtaatcttagttcttttttatgagagagttgtggaagttccattgcctcactaatttacaaaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa