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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctcaatttgctcactttcaatttgactgccttgtccatgcgtatcaattgccatgacgtcgttacagatccgcaggctgccactttgatattag...

Basic information

species Oryza sativa
transcript LOC_Os05g49030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G022619_T01 (Zea mays), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctcaatttgctcactttcaatttgactgccttgtccatgcgtatcaattgccatgacgtcgttacagatccgcag-gctgccactttgatattag---
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | ||||    ||||  ||     |    | |||  |     ||| ||||    || ||     |    |  |||  ||   || |       |||   
GTACTTCCTGAGAAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaac-caatcc-ttcaccctcgtaccgtgaacgttgctccgctttatgaatta--gtgtcggtcgaatgatttagcaatgccagcattccatagataggtg

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G113720_T01 (Zea mays), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctcaatttgctcactttcaatttgactgccttgtccatgcgtatcaattgccatgacgtcgttacagatccgcaggctgccactttgatattag--
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||   |     || ||| || |   | ||         |   || | ||| || |  |     |||||   | | |    ||||      || |   |   
GTACTTCCTGAGAAAGCTCAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTTGCCATCAACGAGgtataccgatcctttctc-ctctttctatggtatatgaataggtgtggatcgatagata-attctcgtttgtgttgccattgctgatgacatgctgccaagt

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G113720_T02 (Zea mays), 5'ss of exon 2
------------------------------------GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctcaatttgctcactttcaatttgactgccttgtccatgcgtatcaattgccatgacgtcgttacagatccgcaggctgccactttgatattag--
                                    |||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||   |     || ||| || |   | ||         |   || | ||| || |  |     |||||   | | |    ||||      || |   |   
ATTTCTGACGGTGGCGTCTCGCTTGATTGCGCGCAGGTACTTCCTGAGAAAGCTCAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTTGCCATCAACGAGgtataccgatcctttctc-ctctttctatggtatatgaataggtgtggatcgatagata-attctcgtttgtgttgccattgctgatgacatgctgccaagt

upper sequence: LOC_Os05g49030.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctcaatttgctcactttcaatttgac--tgccttgtccatgcgtatcaattgccatgacgtcgttacagatccgcaggctgccactttgatattag-
||||||||||||||||||| ||||||||||||||    | || ||  | || || ||||| ||||||  |     ||  || |       ||   |  ||         |    |||| ||||        ||  | ||          ||   || |    | |  
GTACTTCCTGAGGAAGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtat-gtgtggttgtctgaaaactttttcagcgttgaaactatagtaaacatcacttgcagcagt-ccgaaagagggtta-gaattgaagctgttccctcaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88762797|gb|CI772353.1|CI772353
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|27577222|gb|CA999916.1|CA999916
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGT
EST: gi|33809687|gb|CF330733.1|CF330733
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88570392|gb|CI661765.1|CI661765
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|66913967|gb|CX100815.1|CX100815
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|58612568|gb|CK040280.1|CK040280
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACGGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88316271|gb|CI620549.1|CI620549
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88360864|gb|CI625170.1|CI625170
EST:     AGCTGAAGAAGGTGAACAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88724283|gb|CI747542.1|CI747542
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|8334930|gb|BE039914.1|BE039914
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|25802968|gb|CA758929.1|CA758929
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88844894|gb|CI022248.1|CI022248
EST:     GAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: GAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|27577554|gb|CB000249.1|CB000249
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88760669|gb|CI770225.1|CI770225
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|163919924|gb|EG710366.1|EG710366
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88342388|gb|CI645910.1|CI645910
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88310812|gb|CI659415.1|CI659415
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCACCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|11442991|gb|BF430881.1|BF430881
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|117216825|gb|CT845220.1|CT845220
EST:     AGCTGAAGAAAGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|58589076|gb|CF987384.1|CF987384
EST:     AGCTGAAGAAGGTGACGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88695561|gb|CI737599.1|CI737599
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88351680|gb|CI617405.1|CI617405
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|218481926|gb|FG946002.1|FG946002
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88745043|gb|CI768403.1|CI768403
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|27577758|gb|CB000453.1|CB000453
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|86593219|gb|CI255681.1|CI255681
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|58689508|gb|CK078195.1|CK078195
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88340869|gb|CI637029.1|CI637029
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|58691919|gb|CK080606.1|CK080606
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|218505513|gb|FG963988.1|FG963988
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|426271|gb|D22132.1|D22132
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|38565641|gb|CK085094.1|CK085094
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88377724|gb|CI605559.1|CI605559
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|27577519|gb|CB000214.1|CB000214
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|163925551|gb|EG715396.1|EG715396
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|58690967|gb|CK079654.1|CK079654
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88735915|gb|CI757490.1|CI757490
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|38481748|gb|CF965823.1|CF965823
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|33663305|gb|CF294272.1|CF294272
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88760652|gb|CI770208.1|CI770208
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88740617|gb|CI764125.1|CI764125
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|88740217|gb|CI763725.1|CI763725
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
EST: gi|325493467|gb|JG457991.1|JG457991
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAG                         ATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 75 (downstream exon)
Score: 126

GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctca ... tgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGTTACCAGAGCAGAACAGGTTACCACAACATGTACAAGGAATACCGTGACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGACAGATGCTCGCCATCAACGAGgtaccgctcaatttgctcactttcaatttgactgccttgtccatgcgtatcaattgccatgacgtcgttacagatccgcaggctgccactttgatattag

- - - - - - - AGCTGA
- - - - - - - - CTGAAG
- - - - - - - -  TGAAGA
- - - - - - - - -  AAGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcaggc