1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagtgttaattatggtttacactgtgatgttgtagtcgatggtgaatttacaggtagctatttctgtgcttacag
species | Oryza sativa |
transcript | LOC_Os05g44922.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGAEST: gi|58667865|gb|CK056551.1|CK056551
genomic: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
EST: AAGCAATATTTTGTTAATGAAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGAEST: gi|58609232|gb|CK037265.1|CK037265
genomic: AAGCAATATTTTGTTAATG-AAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
EST: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGAEST: gi|88360390|gb|CI612109.1|CI612109
genomic: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
EST: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTT-ACTTCCGTCGTGCTGGAEST: gi|58668738|gb|CK057424.1|CK057424
genomic: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
EST: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGAEST: gi|58606730|gb|CK034763.1|CK034763
genomic: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
EST: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGAEST: gi|58671614|gb|CK060300.1|CK060300
genomic: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
EST: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGAEST: gi|58671004|gb|CK059690.1|CK059690
genomic: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
EST: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG GTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
genomic: GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagt ... gtgcttacagGTGGTCGTTCAGAAGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGgtaaagcagtgttaattatggtttacactgtgatgttgtagtcgatggtgaatttacaggtagctatttctgtgcttacag
- - - - - - - TGAAGA
- - - - - - - - AAGATG