Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaattatcagagcagagctatgacttctcaagagattaatgctgctaagttgacctatttatattctgaatctgattttttatctctttttgctag

Basic information

species Oryza sativa
transcript LOC_Os05g41900.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g41900.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G073535_T01 (Zea mays), 5'ss of exon 4
GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaattatcagagcagagctatgacttctcaagagattaatgctgctaagttgacctatttat--attctgaatctgattttttatctctttttgctag
||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| |||||  ||||| | |  |       |        |  | | | | || | ||  | || | |  || ||||   ||   || |  ||  | ||| |||
GTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaatcttcagacctggccagctgaatactgttttacca-taccgata-gatgttcaatctgttaatactgatcgtgcaattattacttgtcttggtag

upper sequence: LOC_Os05g41900.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G073535_T05 (Zea mays), 5'ss of exon 3
----------------------------------------------GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaattatcagagcagagctatgacttctcaagagattaatgctgctaagttgacctatttat--attctgaatctgattttttatctctttttgctag
                                              ||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| |||||  ||||| | |  |       |        |  | | | | || | ||  | || | |  || ||||   ||   || |  ||  | ||| |||
GGTATCTGCCGGTTGGTGGATATACTGATCTGTTTGTCCGCTGCAGGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGgtattcagaatcttcagacctggccagctgaatactgttttacca-taccgata-gatgttcaatctgttaatactgatcgtgcaattattacttgtcttggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88528638|gb|CI456888.1|CI456888
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGGTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88474396|gb|CI411667.1|CI411667
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|55433785|gb|CV730006.1|CV730006
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88542649|gb|CI471991.1|CI471991
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88522892|gb|CI450688.1|CI450688
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88837315|gb|CI078675.1|CI078675
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88483605|gb|CI420876.1|CI420876
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|89168484|gb|CI038838.1|CI038838
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|58588869|gb|CF987177.1|CF987177
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|33655515|gb|CF278129.1|CF278129
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|55415200|gb|CV727576.1|CV727576
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|396941233|gb|HO188442.1|HO188442
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88519795|gb|CI447449.1|CI447449
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88523460|gb|CI451288.1|CI451288
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|89170606|gb|CI039883.1|CI039883
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88536007|gb|CI465726.1|CI465726
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|33655836|gb|CF278450.1|CF278450
EST:     TTCAGCGTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|33666834|gb|CF297801.1|CF297801
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88276711|gb|CI397513.1|CI397513
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88510334|gb|CI437840.1|CI437840
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88525692|gb|CI452713.1|CI452713
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88515523|gb|CI443177.1|CI443177
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|33677232|gb|CF305471.1|CF305471
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88457932|gb|CI542114.1|CI542114
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATNTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88527920|gb|CI456116.1|CI456116
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGGTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88542359|gb|CI471683.1|CI471683
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88533014|gb|CI460545.1|CI460545
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GGTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|86417727|gb|CI031936.1|CI031936
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|14571321|gb|BI118689.1|BI118689
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|15851156|gb|BI799432.1|BI799432
EST:     TCCAGCTTCCAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: T-CAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88976349|gb|CI024566.1|CI024566
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|58587133|gb|CF985441.1|CF985441
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88554637|gb|CI484828.1|CI484828
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTATTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88250219|gb|CI348449.1|CI348449
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88531108|gb|CI459555.1|CI459555
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88525786|gb|CI452816.1|CI452816
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88434788|gb|CI548985.1|CI548985
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88516842|gb|CI442498.1|CI442498
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88525732|gb|CI452759.1|CI452759
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|33682723|gb|CF310962.1|CF310962
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|29685126|gb|CB681401.1|CB681401
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88487388|gb|CI424659.1|CI424659
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|58589676|gb|CF987984.1|CF987984
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88545831|gb|CI475419.1|CI475419
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|86260752|gb|CI000200.1|CI000200
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|15852472|gb|BI805268.1|BI805268
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACCGGTTTCTAAGCTGC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCA-CGGTTTCTAAGCTGC
EST: gi|38481136|gb|CF965225.1|CF965225
EST:     CACGTT-CTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: CACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88531325|gb|CI459794.1|CI459794
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GGTGGGATTGGTAAGAAGGACNACATCAAGATTCACGGTTTCTAANCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|89171918|gb|CI040428.1|CI040428
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|29687847|gb|CB684122.1|CB684122
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|86526797|gb|CI167003.1|CI167003
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88548366|gb|CI476730.1|CI476730
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88466983|gb|CI539779.1|CI539779
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88558042|gb|CI488500.1|CI488500
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACNTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|33671943|gb|CF300182.1|CF300182
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|55412517|gb|CV724893.1|CV724893
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCCCGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88503700|gb|CI431206.1|CI431206
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88545068|gb|CI474602.1|CI474602
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88480419|gb|CI417690.1|CI417690
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|29687846|gb|CB684121.1|CB684121
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88481051|gb|CI418322.1|CI418322
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|9884552|gb|BE607385.1|BE607385
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88528185|gb|CI454405.1|CI454405
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|55415300|gb|CV727676.1|CV727676
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|568322|gb|D39166.1|D39166
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88469607|gb|CI406878.1|CI406878
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88546764|gb|CI474436.1|CI474436
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTGTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|58607649|gb|CK035682.1|CK035682
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88527204|gb|CI455335.1|CI455335
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTNCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88517184|gb|CI444838.1|CI444838
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|14713839|gb|AU197801.1|AU197801
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCNCGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCNCGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|55435828|gb|CV731050.1|CV731050
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTTTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88988131|gb|CI036101.1|CI036101
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|89170998|gb|CI040275.1|CI040275
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCCAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88550360|gb|CI480327.1|CI480327
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|33692899|gb|CF321138.1|CF321138
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|89198573|gb|CI016658.1|CI016658
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88521657|gb|CI449365.1|CI449365
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
EST: gi|88253972|gb|CI352598.1|CI352598
EST:     TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG                         GCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC
genomic: TTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaa ... tttttgctagGCTGGGATTGCTAAGAAGGACAACATCAAGATTCACGGTTTCTAAGCTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAGgtattgagaattatcagagcagagctatgacttctcaagagattaatgctgctaagttgacctatttatattctgaatctgattttttatctctttttgctag

- -  TCAGCT