1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaatttatgatagtactactaccatgttcttctcagttgctagctatcagccacgagttcgacaagatcatggtgactgtttcgtctcatcagaagctgcacgggttccctttctcttcag
species | Oryza sativa |
transcript | LOC_Os05g36270.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAA GTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGEST: gi|29663073|gb|CB659348.1|CB659348
genomic: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaa ... ttctcttcagGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGG
EST: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAA GTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGEST: gi|29644325|gb|CB649332.1|CB649332
genomic: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaa ... ttctcttcagGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGG
EST: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAA GTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGEST: gi|33684972|gb|CF313211.1|CF313211
genomic: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaa ... ttctcttcagGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGG
EST: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAA GTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGEST: gi|33683625|gb|CF311864.1|CF311864
genomic: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaa ... ttctcttcagGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGG
EST: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAA GTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTEST: gi|29656833|gb|CB653108.1|CB653108
genomic: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaa ... ttctcttcagGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATT
EST: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAA GTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGGEST: gi|33686898|gb|CF315137.1|CF315137
genomic: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaa ... ttctcttcagGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGG
EST: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAA GTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGG
genomic: TCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaa ... ttctcttcagGTATTGCGTTTGTTTTGATCCACTGGATGGCTCCTCAAATATCGATTGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCCCTCCGCGGAAAgtatgtgaaatttatgatagtactactaccatgttcttctcagttgctagctatcagccacgagttcgacaagatcatggtgactgtttcgtctcatcagaagctgcacgggttccctttctcttcag
- - - - - - CTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGAGA
- - - - - - - - - - - - GAGGAG