1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCTGATCTGCTGCAGCTATTGCAGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttccttatccgttattttgcctgctatgcctgtagctgctaggtagatgtgtgctgatttatgtttattttgggggtggtttctggtggttcag
species | Oryza sativa |
transcript | LOC_Os05g36120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACEST: gi|88422008|gb|CI611628.1|CI611628
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACEST: gi|88404556|gb|CI580992.1|CI580992
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACEST: gi|58676544|gb|CK065231.1|CK065231
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACEST: gi|88358652|gb|CI617950.1|CI617950
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGGATAATEST: gi|88404569|gb|CI581005.1|CI581005
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAAT
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACEST: gi|218493188|gb|FG964288.1|FG964288
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACEST: gi|58602965|gb|CK013493.1|CK013493
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACEST: gi|88721255|gb|CI744554.1|CI744554
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
EST: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAG GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
genomic: AGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttcct ... ggtggttcagGCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATCTGCTGCAGCTATTGCAGCCGTTTGGCAATGTTTCCAAGATCGTCATGCTGCGTGCCAAGAATCAGgcgagttccttatccgttattttgcctgctatgcctgtagctgctaggtagatgtgtgctgatttatgtttattttgggggtggtttctggtggttcag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC