1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccgaaacgcaaacaatcaagtacagtagacagtctctagtcgtgatcgaattgttgctacttag
species | Oryza sativa |
transcript | LOC_Os05g35266.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGEST: gi|29670488|gb|CB666763.1|CB666763
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
EST: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGEST: gi|88406081|gb|CI593861.1|CI593861
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
EST: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGAGGTGGAGCGEST: gi|58671661|gb|CK060347.1|CK060347
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
EST: AACCCGAACGACATCATGAACGAGGTGTCAAGAAGTCACCAAGCAATCCA GTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
genomic: AACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccga ... tgctacttagGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAgtaagtccgaaacgcaaacaatcaagtacagtagacagtctctagtcgtgatcgaattgttgctacttag
- - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA