1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTCTGACCTACCGTGAGGTTATTTCCATCTTGATGCAGCGGCATGTTATGGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGGgtgcgtgccctgatttgctgcatcattgtacgagaagtcaatgtctaattaattccatggaatcccttattagtttcttgtatcatgcag
species | Oryza sativa |
transcript | LOC_Os05g30530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGG ACGTTGTGTCAATTGCAAAGACTGGGGAGAATTTCCGCCTTCTGTATGACAEST: gi|88580947|gb|CI697911.1|CI697911
genomic: GGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGGgtgcgtgccc ... tatcatgcagACGTTGTGTCAATTGCAAAGACTGGGGAGAATTTCCGCCTTCTGTATGACA
EST: GGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGG ACGTTGTGTCAATTGCAAAGACTGGGGAGAATTTCCGCCTTCTGTATGACAEST: gi|5002967|gb|AU068076.1|AU068076
genomic: GGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGGgtgcgtgccc ... tatcatgcagACGTTGTGTCAATTGCAAAGACTGGGGAGAATTTCCGCCTTCTGTATGACA
EST: GGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGG ACGTTGTGTCAATTGCAAAGACTGGGGAGNATTTCCGCCTTC
genomic: GGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGGgtgcgtgccc ... tatcatgcagACGTTGTGTCAATTGCAAAGACTGGGGAGAATTTCCGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGACCTACCGTGAGGTTATTTCCATCTTGATGCAGCGGCATGTTATGGTTGATGGAAAGGTCAGGACTGACAAGACTTATCCGGCTGGATTCATGGgtgcgtgccctgatttgctgcatcattgtacgagaagtcaatgtctaattaattccatggaatcccttattagtttcttgtatcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA