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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGGGCGTCAACACTCAGTTTCTGATCGAGCAAAAGTTGCCATGCAAGAATATCTGAACCATTTTTTGGGGAACTTGGACATTGTCAACTCACCGGAGgtactcattacccaaatctttatacatttcactctattgtttccaattagaataaatgttgaccaaaatatcctatctgcatctagattagttttatcgtcaagagtcagtactaaaatatctttcaaaatacag

Basic information

species Oryza sativa
transcript LOC_Os05g29050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 3
TCTGGGGCGTCAACACTCAGTTTCTGATCGAGCAAAAGTTGCCATGCAAGAATATCTGAACCATTTTTTGGGGAACTTGGACATTGTCAACTCACCGGAGgtactcattacccaaatctttatacatttcactctattgtttccaattagaataaatgttgaccaaaatatcctatctg--catctagattagttttatcgtcaagagtcagtactaaaatatctttcaaaatacag
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TCTTGGACGTCAAAACTCTATTTCTGATCGAGCAAAAGTTGCAATGCAAGAATATCTAAACCATTTCTTAGGGAACTTGGATATCGTCAATTCACGGGAGgtactaaaagctttgtacatttcaaagtagacaccctcataattgaacatta-aaatgttaatcagaacaccttatttggctatctttattcaatttatttgcacta--cag-------------------------