1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAGTTTACAATCACGGACATCTTCTCGACTATTTAACCATGCACCATCACCGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttacttcatttgcttttcttctttgctggtattattagaaaatccagtttcctgacatggatttgatattttaatttacag
species | Oryza sativa |
transcript | LOC_Os05g26914.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCEST: gi|58673557|gb|CK062243.1|CK062243
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACEST: gi|58608089|gb|CK036122.1|CK036122
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCAC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGGAATCEST: gi|29685207|gb|CB681482.1|CB681482
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCEST: gi|58692323|gb|CK081010.1|CK081010
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAEST: gi|29620923|gb|CB625934.1|CB625934
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGA
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCEST: gi|29680449|gb|CB676724.1|CB676724
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCEST: gi|29681007|gb|CB677282.1|CB677282
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCEST: gi|58660788|gb|CK049468.1|CK049468
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCEST: gi|29680374|gb|CB676649.1|CB676649
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
EST: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCT GATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
genomic: CGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttact ... taatttacagGATTTCTATTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTTTACAATCACGGACATCTTCTCGACTATTTAACCATGCACCATCACCGAGATTTCGCCATCGAAGGAGTTCAAGGTTCATTGTCAGAGCTGATGCTgtgagttacttcatttgcttttcttctttgctggtattattagaaaatccagtttcctgacatggatttgatattttaatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT