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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCCCTGTCAAAACTTATCCAAGATCGCTGATGCTTCCAAAGGAGTTTGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaattagtacctcaatgtttgacctgtaattagttctaatgaatacactaaccattcttcatttcctcaataattttccaccaaaccatgggaaatgttgattttcatgcgcag

Basic information

species Oryza sativa
transcript LOC_Os05g24550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G108849_T04 (Zea mays), 5'ss of exon 5
GATGTCCCTGTCAAAACTTATCCAAGATCGCTGATGCTTCCAAAGGAGTTTGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaattagt-acctcaatg--tttgacctgta-attagttctaatgaatacactaaccattcttcatttcctcaataattttccaccaaaccatgggaaatgttgattttcatgcgcag
 |||| ||||||||||||||| ||||||| |||   |||||||| |||||||| || || ||||||||||| |  || | ||||||||||| ||||||||||| ||| | || || | |||  ||  ||| | ||||| ||   || || |   | | |  |    |  ||||||| |   | | |||      || | |||  ||                   
AATGTTCCTGTCAAAACTTATTCAAGATCACTGGAACTTCCAAAAGAGTTTGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttatttggttaactcggtgcattttagctgtatatctattttagt---tgc-ccgatggatactcatttcttgtttgaattttt---caatcctggataac------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688070|gb|CK076757.1|CK076757
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     CATGGTCACAGTGTAACACAATGGGGACCATACTTG                         ATCAG
genomic: CATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|58609130|gb|CK037163.1|CK037163
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG
EST: gi|29656753|gb|CB653028.1|CB653028
EST:     TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTG                         ATCAG
genomic: TGATGCCAGGTCTGCATGGTCACAGTGTAACACAATTGGGACCATACTTGgtaagttcaa ... tcatgcgcagATCAG