1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCAGACAAAGAACAAGGACACCAGAAAACAATTACTTCACTTTCAAAATCTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatattttgttgatgtggctagcataatcatgtcttccaattgtttgcactttgtgctacaaatatgattatttcctgacatgcacattgctatctggctag
species | Oryza sativa |
transcript | LOC_Os05g16660.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|86500620|gb|CI143253.1|CI143253
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGAGCCTGATCAAGACATATGTCACCGAGCGAEST: gi|86495231|gb|CI137864.1|CI137864
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|66924182|gb|CX111030.1|CX111030
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|88267414|gb|CI379349.1|CI379349
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|88688380|gb|CI731956.1|CI731956
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|86877402|gb|CI312766.1|CI312766
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGNTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCTAEST: gi|88688391|gb|CI731967.1|CI731967
genomic: CAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|88688679|gb|CI732255.1|CI732255
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGNTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|88690961|gb|CI735040.1|CI735040
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|88690662|gb|CI734741.1|CI734741
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|88691102|gb|CI735181.1|CI735181
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|86858704|gb|CI274995.1|CI274995
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: AGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|55411136|gb|CV723512.1|CV723512
genomic: AGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGAEST: gi|88691159|gb|CI735238.1|CI735238
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
EST: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAG CTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
genomic: CTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatatttt ... atctggctagCTATGGGATACAAGAACTCTGACCCTGATCAAGACATATGTCACCGAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGACAAAGAACAAGGACACCAGAAAACAATTACTTCACTTTCAAAATCTGCAGATTGGTCACATTTCCTAACAGGCTCCTTGGATAAGTCTGCTAAGgtgatattttgttgatgtggctagcataatcatgtcttccaattgtttgcactttgtgctacaaatatgattatttcctgacatgcacattgctatctggctag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT