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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGCATTATCTGGTCTTATCTTCACAGAGACAATCCAGAGGGTTGTTCTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcatattcttaaaatattttggaaagatttatgtttttttaataattccccactaattttccatagatcag

Basic information

species Oryza sativa
transcript LOC_Os05g15890.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g15890.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G146041_T03 (Zea mays), 5'ss of exon 2
ACATGGCATTATCTGGTCTTATCTTCACAGAGACAATCCAGAGGGTTGTTCTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttc------atatt-cttaaaatattt-------tggaaagatttatgtttttttaataattccc--cactaattttccatagatcag---------------------
| ||||  |||| |||||||||||||||||||| || || || || |||||| | ||||||||||||||||||||||||| ||| |  ||||||||||||||| || |      || ||  ||  |||             | || |   |     | || || |||     ||||  ||||  | | | | |                     
AGATGGTGTTATATGGTCTTATCTTCACAGAGAGAACCCTGAAGGCTGTTCTATATGCCCCTTCTGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGgtttttcccaccctatgttatttggaatgacagcagcagcagcaacaacaaaaacctgttcattatttttgacacttttttttgaaaaaactgatatgtcttcttgtactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626915|gb|CB631926.1|CB631926
EST:     CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAG                         A
genomic: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcat ... catagatcag-
EST: gi|29626915|gb|CB631926.1|CB631926
EST:     CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAG                         A
genomic: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcat ... catagatcag-
EST: gi|27548508|gb|CA766438.2|CA766438
EST:     CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAG                         TAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATTGAGAAGCA
genomic: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcat ... catagatcagTAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATTGAGAAGCA