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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTCGAGTTCGCCGACAAGTACCGGGGCAAGTACGACGCCAGCATCACGGTGGCGCGAAACTACTACGGCTCCTTCAGCGGATACGGGgtaagtggcgtggcggcggcgccgtaggattcggacgaacaccttgctgacatgacctgatcttgctgcag

Basic information

species Oryza sativa
transcript LOC_Os05g12150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g12150.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G143747_T01 (Zea mays), 5'ss of exon 3
CTGTTCGAGTTCGCCGACAAGTACCGGGGCAAGTACGACGCCAGCATCACGGTGGCGCGAAACTACTACGGCTCCTTCAGCGGATACGGGgtaagtgg-----cgtggcggcggcgccgtaggattcggacg--aacaccttgctgac--atgacctgatcttgctgcag---------------
|||||| ||||||||||||||||||| ||||||||||||||||||||||| || || || ||||||||||| |||||||| |||||||||||||||||     |    | ||     |   |   |   ||   ||   | || |  |  |  ||||| |     | | |               
CTGTTCCAGTTCGCCGACAAGTACCGCGGCAAGTACGACGCCAGCATCACTGTCGCTCGCAACTACTACGGATCCTTCAGTGGATACGGGgtaagtggacatgctcatctgcaagcacactgcccttcaacttcaatgtcgtggtacctgactacctggttcccttcccgtacgtggttctgcag