1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgctagcttgtactgtatttttagcagcttaatcagaccttaaaaattcaattcattggactcacatactacatataaatctttcttgcttggatcag
species | Oryza sativa |
transcript | LOC_Os05g09550.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTG GCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGEST: gi|27578253|gb|CB000948.1|CB000948
genomic: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgcta ... cttggatcagGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATG
EST: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTG GCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGEST: gi|218492921|gb|FG948483.1|FG948483
genomic: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgcta ... cttggatcagGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATG
EST: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTG GCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGEST: gi|44669030|gb|CR282464.1|CR282464
genomic: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgcta ... cttggatcagGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATG
EST: TTGTGGATGATGATATTTGGTGCCATATCACTGCTG GCATTTTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGEST: gi|157651306|gb|EX450940.1|EX450940
genomic: TTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgcta ... cttggatcagGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATG
EST: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTG GCATTGTCAACTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCEST: gi|27554498|gb|CA998398.1|CA998398
genomic: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgcta ... cttggatcagGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACC
EST: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTG GCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATG
genomic: GCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgcta ... cttggatcagGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGgtcagtgctagcttgtactgtatttttagcagcttaatcagaccttaaaaattcaattcattggactcacatactacatataaatctttcttgcttggatcag
- - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - GCTGAT