1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCTGATGATACTCCTTGGGATGGAGgtaaggaatttaaagtctttccttttatttggggtttgcatttgggacttgggagagtaatcacaggcatgatatggggaaatttaactattttccactt...
species | Oryza sativa |
transcript | LOC_Os05g08960.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|427642|gb|D23775.1|D23775
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGA-GATTATCCTAACAAGC-ACEST: gi|38481076|gb|CF965165.1|CF965165
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88582246|gb|CI699641.1|CI699641
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACEST: gi|88317559|gb|CI672136.1|CI672136
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCEST: gi|88852170|gb|CI683688.1|CI683688
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAEST: gi|2311824|gb|C27979.1|C27979
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCA
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88851711|gb|CI674913.1|CI674913
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|699844|gb|D46135.1|D46135
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: GCCTGATGATACTCCTTGGGATGGAG GGACGTTAAAGTTGACACTTCAGTTTACTGAGGATTATCCTAACAAGGCACEST: gi|88327706|gb|CI657746.1|CI657746
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88401271|gb|CI685267.1|CI685267
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88739102|gb|CI762610.1|CI762610
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTEST: gi|88577108|gb|CI673663.1|CI673663
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACT
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACEST: gi|88391188|gb|CI595442.1|CI595442
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTEST: gi|88306809|gb|CI671972.1|CI671972
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTT
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88727218|gb|CI750873.1|CI750873
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTNCAAGCTGACAEST: gi|33661335|gb|CF292302.1|CF292302
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACA
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88665600|gb|CI715756.1|CI715756
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCACTCTACTGAAGATTATCCTAACAAGNCACEST: gi|88904831|gb|CI712130.1|CI712130
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTCCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88727954|gb|CI751316.1|CI751316
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTEST: gi|88386921|gb|CI629248.1|CI629248
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTT
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTEST: gi|88349310|gb|CI678287.1|CI678287
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCT
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88425673|gb|CI689322.1|CI689322
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTANGTNCAAGCTGACACTTCAGTTTACTGEST: gi|88427316|gb|CI569354.1|CI569354
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTG
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|1632399|gb|C20128.1|C20128
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTNACAAGGCACEST: gi|88333725|gb|CI643757.1|CI643757
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88387981|gb|CI590257.1|CI590257
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88305368|gb|CI630530.1|CI630530
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAEST: gi|88429053|gb|CI689932.1|CI689932
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAA
EST: CCCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATEST: gi|88740648|gb|CI764156.1|CI764156
genomic: CCC-TGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTAT
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACEST: gi|88410668|gb|CI687005.1|CI687005
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: CCCTGATGATACTCCTTGGGATGGAG GTACGTTCAAGCTGACACTTCAGTTTACT
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGATGATACTCCTTGGGATGGAGgtaaggaatttaaagtctttccttttatttggggtttgcatttgggacttgggagagtaatcacaggcatgatatggggaaatttaactattttccactt
- - - - - - - - - GATGGA