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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGATGATACTCCTTGGGATGGAGgtaaggaatttaaagtctttccttttatttggggtttgcatttgggacttgggagagtaatcacaggcatgatatggggaaatttaactattttccactt...

Basic information

species Oryza sativa
transcript LOC_Os05g08960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g08960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G02760.1 (Arabidopsis thaliana), 5'ss of exon 3
CCCTGATGATACTCCTTGGGATGGAGgtaaggaatttaaagtctt-tccttttatttggggtttgcatttgggacttgggagagtaatcacaggcatgatatggggaaatttaactattttccactt
 ||||||||||| ||||||||||||||||| |  ||   | | |  ||  || | ||| |  ||           ||  |    |  ||  | |  |  | ||       ||               
GCCTGATGATACCCCTTGGGATGGAGgtaaagttttgttattgtaatcacttaacttgagaattttggcaatcttttatgtatctggtcttatgtctcttttgtatggtcttgttag----------

upper sequence: LOC_Os05g08960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0032g00310.t01 (Vitis vinifera), 5'ss of exon 2
CCCTGATGATACTCCTTGGGATGGAGgtaaggaatttaaagtctttccttttatttggggtttgcatttgggacttgggagagtaatcacaggcatgatatggggaaatttaactattttccactt--
 |||||||||||||||||||||||||||  | | |||  | | || |  ||  | ||    |    |||     ||   |    |||     |       |    || ||| | |     ||  ||  
ACCTGATGATACTCCTTGGGATGGAGgtgggtactttcgattattactgtt--tctgcaagtcatttttcatggttattatgtcaattgattgttgatggttcataattttgatttccccccttttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86596611|gb|CI286524.1|CI286524
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88988531|gb|CI037767.1|CI037767
EST:     GATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: GATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|427642|gb|D23775.1|D23775
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGA-GATTATCCTAACAAGC-AC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|11172348|gb|AU164240.1|AU164240
EST:     CCCTGATGATACTCCTTGGGATGAAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|66915271|gb|CX102119.1|CX102119
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|33677902|gb|CF306141.1|CF306141
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|25800383|gb|CA756344.1|CA756344
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88582246|gb|CI699641.1|CI699641
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGAC
EST: gi|88317559|gb|CI672136.1|CI672136
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGC
EST: gi|218505588|gb|FG952847.1|FG952847
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88852170|gb|CI683688.1|CI683688
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCA
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCA
EST: gi|86828978|gb|CI282739.1|CI282739
EST:     TGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: TGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|218493155|gb|FG956466.1|FG956466
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|2311824|gb|C27979.1|C27979
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|33813641|gb|CF332707.1|CF332707
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88851711|gb|CI674913.1|CI674913
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|699844|gb|D46135.1|D46135
EST:     GCCTGATGATACTCCTTGGGATGGAG                         GGACGTTAAAGTTGACACTTCAGTTTACTGAGGATTATCCTAACAAGGCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|3767211|gb|AU031321.1|AU031321
EST:     CCCNTGATGATACCCCTTGGGATGGA-                         GTACCGTTCAAGCTGACACTTCAGTTTACTGAAGATTACCCTAACAAGCCC
genomic: CCC-TGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTA-CGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAG-CC
EST: gi|29619509|gb|CB624521.1|CB624521
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88327706|gb|CI657746.1|CI657746
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|29619932|gb|CB624944.1|CB624944
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|33656466|gb|CF279080.1|CF279080
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|8857214|gb|AU094532.1|AU094532
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|38481076|gb|CF965165.1|CF965165
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88401271|gb|CI685267.1|CI685267
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88739102|gb|CI762610.1|CI762610
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACT
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACT
EST: gi|88577108|gb|CI673663.1|CI673663
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACAC
EST: gi|88391188|gb|CI595442.1|CI595442
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTT
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTT
EST: gi|88306809|gb|CI671972.1|CI671972
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|218504730|gb|FG949645.1|FG949645
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88727218|gb|CI750873.1|CI750873
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTNCAAGCTGACA
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACA
EST: gi|29619508|gb|CB624520.1|CB624520
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|33661335|gb|CF292302.1|CF292302
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|89170236|gb|CI039513.1|CI039513
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|87030298|gb|CI252575.1|CI252575
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|86510211|gb|CI152844.1|CI152844
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88665600|gb|CI715756.1|CI715756
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCACTCTACTGAAGATTATCCTAACAAGNCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88904831|gb|CI712130.1|CI712130
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTCCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88727954|gb|CI751316.1|CI751316
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTT
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTT
EST: gi|88386921|gb|CI629248.1|CI629248
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCT
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCT
EST: gi|88349310|gb|CI678287.1|CI678287
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88425673|gb|CI689322.1|CI689322
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTANGTNCAAGCTGACACTTCAGTTTACTG
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTG
EST: gi|88427316|gb|CI569354.1|CI569354
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|218478507|gb|FG954789.1|FG954789
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|58588665|gb|CF986973.1|CF986973
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|86833840|gb|CI338211.1|CI338211
EST:     TTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: TTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|1632399|gb|C20128.1|C20128
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTNACAAGGCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88333725|gb|CI643757.1|CI643757
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88387981|gb|CI590257.1|CI590257
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88305368|gb|CI630530.1|CI630530
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAA
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAA
EST: gi|33813642|gb|CF332708.1|CF332708
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|86415688|gb|CI029699.1|CI029699
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|8858097|gb|AU095415.1|AU095415
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88429053|gb|CI689932.1|CI689932
EST:     CCCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTAT
genomic: CCC-TGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTAT
EST: gi|88740648|gb|CI764156.1|CI764156
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|29619931|gb|CB624943.1|CB624943
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|3767210|gb|AU031320.1|AU031320
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
EST: gi|88410668|gb|CI687005.1|CI687005
EST:     CCCTGATGATACTCCTTGGGATGGAG                         GTACGTTCAAGCTGACACTTCAGTTTACT
genomic: CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACT
EST: gi|8527972|gb|AU092787.1|AU092787
EST:     CCCTGATGATACTCCCTTGGGATGGAG                         GTCCGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC
genomic: CCCTGATGATACT-CCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 71 (downstream exon)
Score: 176

CCCTGATGATACTCCTTGGGATGGAGgtaaggaatt ... ccatcgccagGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTGATGATACTCCTTGGGATGGAGgtaaggaatttaaagtctttccttttatttggggtttgcatttgggacttgggagagtaatcacaggcatgatatggggaaatttaactattttccactt

- - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggagag