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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGCCGCCGCCGCCGGCGGCCGGTTCGGGATGAAGCCTCGCGGCGTCGGCGTCGTCGGCGGCGCGGCGCGGCGCGACTCCACCAGCAGCGGCCACGAGgtgagtgccacgtcacctcagcttcagcttccgctgccgacggattcagacaagccgtactgccgtgctggagtgcaccggcgctatagatggccatgtg...

Basic information

species Oryza sativa
transcript LOC_Os05g07764.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07764.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G131650_T04 (Zea mays), 5'ss of exon 3
------CTCCGCCGCCGCCGCCGGCGGCCGGTTCGGGATGAAGCCTCGCGGCGTCGGCGTCGTCGGCGGCGCGGCGCGGCGCGACTCCACCAGCAGCGGCCACGAGgtgagtgccacgtcacctcagcttcagcttccgctgc-----cgacggattcagacaagccgtactgccgtgctggagtgcaccggcg-ctatagatggccatgtg
        || ||||| |  ||| |  |||||||||||||||| | ||||| |  ||  |||     ||  || ||||||||||||||||| || ||||||||||||| |||||||  ||  |      ||||   |||| ||     ||||||   | |   | | || |  |  | |   | |  |||   | || |  | |  ||    
GCTCAGGGCCACCGCCTCTTCCGCCACCCGGTTCGGGATGAAGGCCCGCGGTGCGGGGCTCG-----GGTTCG-CGCGGCGCGACTCCACCGGCGGCGGCCACGAGgtcagtgcca-atcggcgatcactcagtcaccgccgcggtgacgacggtcgccggtcaacagt-caacactccaataatttacctttggctgtgcaagcgca----