1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAAGACAAGCTTGATTTCAAAGGTGGAAATGTTCATGTCATAACAAGCAAAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagctagcaatttgctcaatggattacaaatacatcttttggttcttatgttgtgcattggttggtgatctatcagtttgcttcacactataca...
species | Oryza sativa |
transcript | LOC_Os05g07690.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|58596706|gb|CK007234.1|CK007234
genomic: GGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|218480992|gb|FG958013.1|FG958013
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|88957526|gb|CI011455.1|CI011455
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: ATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|88847816|gb|CI006002.1|CI006002
genomic: ATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: GGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|89199020|gb|CI253094.1|CI253094
genomic: GGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATC GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|58683882|gb|CK072569.1|CK072569
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|33661687|gb|CF292654.1|CF292654
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: GATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|33821282|gb|CF336453.1|CF336453
genomic: GATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|86596652|gb|CI286565.1|CI286565
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTCCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|88321921|gb|CI673069.1|CI673069
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|38480845|gb|CF964934.1|CF964934
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|86593727|gb|CI266407.1|CI266407
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: GGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCAEST: gi|33814147|gb|CF332955.1|CF332955
genomic: GGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
EST: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATT GTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
genomic: AAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagc ... tgttttgtagGTTGTGGCAAATTTCAGTGCTTCCTGGTGTGGACCATGTCGTGTTATTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGACAAGCTTGATTTCAAAGGTGGAAATGTTCATGTCATAACAAGCAAAGAGGACTGGGATAGGAAGATTGAAGAAGCAAACAAGGATGGGAAAATTgtaagcaagctagcaatttgctcaatggattacaaatacatcttttggttcttatgttgtgcattggttggtgatctatcagtttgcttcacactataca
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG