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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCGAGTTGGAGGGTGTTCAAGGAGAATTTTCAGCCTTCCAAAGTCCGGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacagtagttcaatttctatttgcatttgaaattggtcttcttgtgctttcatatcaatatatgatggtccgatttgattgcaaactattactat...

Basic information

species Oryza sativa
transcript LOC_Os05g07130.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07130.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 3
TGCAGCGAGTTGGAGGGTGTTCAAGGAGAATTTTCAGCCTTCCAAAGTCCGGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacagtagttcaatttctatt-tgcatttgaaattggtctt-cttgtgctttcatatcaatatatgatggtccgatttgattgcaaactattactat-
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TGCTGCAAGCTGGAGGGTGTACAAGGAGAACTTTCAGCCTTCCAAAGTTCGGGGGATCCCTGATATCAGTATCAATGTCACACCCACTAATGGAGCTGAGgtaattgcatttgtgc--ttgatattgtatgtttccccgtggtgatgcatatggttgcaaagttctgtgcgaatgaccgcgaccgtgccaaaccgatgc-ata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29616051|gb|CB621063.1|CB621063
EST:     GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAG                         GATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
genomic: GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacag ... cttactgtagGATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
EST: gi|33799660|gb|CF325693.1|CF325693
EST:     GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAG                         GATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
genomic: GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacag ... cttactgtagGATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
EST: gi|29615976|gb|CB620988.1|CB620988
EST:     GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAG                         GATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
genomic: GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacag ... cttactgtagGATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
EST: gi|29616011|gb|CB621023.1|CB621023
EST:     GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAG                         GATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
genomic: GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacag ... cttactgtagGATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
EST: gi|29615974|gb|CB620986.1|CB620986
EST:     GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAG                         GATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
genomic: GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacag ... cttactgtagGATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
EST: gi|33799018|gb|CF325368.1|CF325368
EST:     GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAG                         GATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA
genomic: GGGGAATCCCTGATGTCAGTATAAATGTCGCACCTGCGCATGGGACCGAGgtgataacag ... cttactgtagGATACATCTACTGAAAGTTTGGAGCTTGACTTGGAGCATTACGTTATTCCA