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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatatctttttcttttcaagtagagtcttttaagtatgggtctcatttgtgcaccattcaagaggaattactgaaaatccccccattttctctcaactgttcag

Basic information

species Oryza sativa
transcript LOC_Os05g04630.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29631562|gb|CB636571.1|CB636571
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29676557|gb|CB672832.1|CB672832
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58695107|gb|CK083794.1|CK083794
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58662934|gb|CK051620.1|CK051620
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29615431|gb|CB620443.1|CB620443
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29678514|gb|CB674789.1|CB674789
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33677805|gb|CF306044.1|CF306044
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGNTTCTGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGG-TTCTGGGGCAATTTCTGGATTCTTC
EST: gi|29634261|gb|CB639270.1|CB639270
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29680077|gb|CB676352.1|CB676352
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|117234267|gb|CT842364.1|CT842364
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|426282|gb|D22144.1|D22144
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGGAACTTGCAAAATTACAT-CGGTTCTTGGGGCAATTT
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCT-GGGGCAATTT
EST: gi|33683171|gb|CF311410.1|CF311410
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTA--TACGGGTTCTGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGG-TTCTGGGGCAATTTCTGGATTCTTC
EST: gi|29676212|gb|CB672487.1|CB672487
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|4714998|gb|AU056115.1|AU056115
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGG-CAATTTCTGGATTCTTC
EST: gi|33655682|gb|CF278296.1|CF278296
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATT-CATACGGGTTCTGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGG-TTCTGGGGCAATTTCTGGATTCTTC
EST: gi|58588210|gb|CF986518.1|CF986518
EST:     GCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58672443|gb|CK061129.1|CK061129
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33676712|gb|CF304951.1|CF304951
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58689178|gb|CK077865.1|CK077865
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58688874|gb|CK077561.1|CK077561
EST:     CGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58660269|gb|CK048949.1|CK048949
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58695208|gb|CK083895.1|CK083895
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29678428|gb|CB674703.1|CB674703
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29636076|gb|CB641085.1|CB641085
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGGTCTGGGGCAATTCCTGGATTCT
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCT
EST: gi|58692954|gb|CK081641.1|CK081641
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58694420|gb|CK083107.1|CK083107
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29638564|gb|CB643573.1|CB643573
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58606761|gb|CK034794.1|CK034794
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACCATACGGTTCTGGGGCAATTT-TGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTAC-ATACGGTTCTGGGGCAATTTCTGGATTCTTC
EST: gi|29676404|gb|CB672679.1|CB672679
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33654351|gb|CF276965.1|CF276965
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAAT-ACATACGGGTTCTGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGG-TTCTGGGGCAATTTCTGGATTCTTC
EST: gi|27577353|gb|CB000048.1|CB000048
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33670080|gb|CF298319.1|CF298319
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACCGGTTCTGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATAC-GGTTCTGGGGCAATTTCTGGATTCTTC
EST: gi|29680749|gb|CB677024.1|CB677024
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|25799139|gb|CA755100.1|CA755100
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29619013|gb|CB624025.1|CB624025
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29646767|gb|CB651774.1|CB651774
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33654754|gb|CF277368.1|CF277368
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|700515|gb|D46806.1|D46806
EST:     CAACTCGAAAAAGTCGGNGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CAACTCGAAAAAGTC-GAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58608482|gb|CK036515.1|CK036515
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58689258|gb|CK077945.1|CK077945
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29615278|gb|CB620290.1|CB620290
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|84117024|gb|CD150791.1|CD150791
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58693366|gb|CK082053.1|CK082053
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTTGGATTCTT
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCT-GGATTCTT
EST: gi|29667624|gb|CB663899.1|CB663899
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCTGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29632395|gb|CB637404.1|CB637404
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58687763|gb|CK076450.1|CK076450
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58608866|gb|CK036899.1|CK036899
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATT
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATT
EST: gi|33795126|gb|CF323436.1|CF323436
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTT-CAAAGCAGATG                         GAGAAACTTGCAAAAT-ACATACGGTTCTGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTC
EST: gi|29645305|gb|CB650312.1|CB650312
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29635393|gb|CB640402.1|CB640402
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29616093|gb|CB621105.1|CB621105
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58690622|gb|CK079309.1|CK079309
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29634391|gb|CB639400.1|CB639400
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACCGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29638609|gb|CB643618.1|CB643618
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58692931|gb|CK081618.1|CK081618
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|2312447|gb|C28602.1|C28602
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33684656|gb|CF312895.1|CF312895
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATA
EST: gi|29642216|gb|CB647223.1|CB647223
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|27577332|gb|CB000027.1|CB000027
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|58591597|gb|CF989905.1|CF989905
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33666702|gb|CF297669.1|CF297669
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACNGGTTCTGGGGCAATTTCTGGATTCTTC
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATAC-GGTTCTGGGGCAATTTCTGGATTCTTC
EST: gi|58691118|gb|CK079805.1|CK079805
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29675833|gb|CB672108.1|CB672108
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29643726|gb|CB648733.1|CB648733
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|29616174|gb|CB621186.1|CB621186
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|86596757|gb|CI286670.1|CI286670
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
EST: gi|33655718|gb|CF278332.1|CF278332
EST:     CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATG                         GAGAAACTTGCAAAATTACAT
genomic: CCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACAT
EST: gi|58693676|gb|CK082363.1|CK082363
EST:     TTAC-AAGCAGATG                         GAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA
genomic: TTACAAAGCAGATGgtatgtatat ... aactgttcagGAGAAACTTGCAAAATTACATACGGTTCTGGGGCAATTTCTGGATTCTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTACAAAGCAGATGgtatgtatatctttttcttttcaagtagagtcttttaagtatgggtctcatttgtgcaccattcaagaggaattactgaaaatccccccattttctctcaactgttcag

- - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG