1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TATAAAGTACGATCAGATCCGTGACATCCTGAATGGACTTGCTGAGAGGTTTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattcttctgttatttccgctatgagaccaccttacatgacttagaccaacaattaatgtggactgccgtaattaattctaatggagaaacaaacaaaaaaatgacagtttgttctgacaattttagtttatcccttaactcaggctacttatatggttgcag
species | Oryza sativa |
transcript | LOC_Os05g03820.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAG GGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGTEST: gi|88347509|gb|CI637449.1|CI637449
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAATGTTATCGGTCTCAAGCAG GGAAAGCAAAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTEST: gi|58689197|gb|CK077884.1|CK077884
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAG GGAAAACAAAGCATTTCEST: gi|88573359|gb|CI664930.1|CI664930
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTC
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAATGTTATCGGTCTCAAGCAG GGAAAGCAAAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTEST: gi|58658531|gb|CK047211.1|CK047211
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAATGTTATCGGTCTCAAGCAG GGAAAGCAAAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTEST: gi|88342557|gb|CI637133.1|CI637133
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAATGTTATCGGTCTCAAGCAG GGAAAGCAAAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTEST: gi|29679436|gb|CB675711.1|CB675711
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAATGTTATCGGTCTCAAGCAG GGAAAGCAAAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTEST: gi|88336064|gb|CI647258.1|CI647258
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAATGTTATCGGTCTCAAGCAG GGAAAGCAAAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTEST: gi|29677970|gb|CB674245.1|CB674245
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
EST: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAG GGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
genomic: TTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattct ... atggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAAAGTACGATCAGATCCGTGACATCCTGAATGGACTTGCTGAGAGGTTTGATTGGGACAAGATAGTTGAAGAAAATAACGTTATCGGTCTCAAGCAGgtagtattcttctgttatttccgctatgagaccaccttacatgacttagaccaacaattaatgtggactgccgtaattaattctaatggagaaacaaacaaaaaaatgacagtttgttctgacaattttagtttatcccttaactcaggctacttatatggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA