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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtcatctctgcctttacctatacatatgatgccagagtgcgtgcaaaataagtttccttggcgggctgtaggctgcacaattttgccgctagac...

Basic information

species Oryza sativa
transcript LOC_Os04g59040.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59040.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G104918_T03 (Zea mays), 5'ss of exon 3
GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtcatctctgccttt----acctatacatatgatgccagagtgcg--tgcaaaataagtttccttggcgggctgtaggctgcacaattttgccgctagac
| ||||||||||||||||| ||||| |||||||||  ||||  ||| ||     | ||   ||| | ||      |  |   || || ||  | | |     |    |   || | ||  | | ||  |      
GTCCTGGTGCTCCTGCTGTATTCAATGTTgtaagtaccatcattgctttctaacagcttggcatgttatatgtttgctctgctgaaacatttgatgcacctacaacatactgg-tacatgagtctgttga-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87023771|gb|CI288124.1|CI288124
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|88732604|gb|CI755781.1|CI755781
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|86848615|gb|CI293930.1|CI293930
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|2309908|gb|C26063.1|C26063
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|88721865|gb|CI743377.1|CI743377
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|286879|gb|D15686.1|D15686
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|88726501|gb|CI750156.1|CI750156
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|33684220|gb|CF312459.1|CF312459
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|86907275|gb|CI292840.1|CI292840
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|88423146|gb|CI613447.1|CI613447
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|88742766|gb|CI766274.1|CI766274
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|163927162|gb|EG710251.1|EG710251
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCA
EST: gi|88405920|gb|CI591315.1|CI591315
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGACATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|88427290|gb|CI586838.1|CI586838
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: gi|25799147|gb|CA755108.1|CA755108
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGTGA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGA
EST: gi|163925905|gb|EG712281.1|EG712281
EST:     GCCCTGGTGCTCCTGCTGTCTTCAACGTT                         GTTGTTGAGATCACCAAGGGAAGCAAAGCGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA