1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCACTACTGCCTCCTCCACAGTGTGAATCAAAGTTGATAACTAGGCCTGATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttctagcttgtgttatttttatttattgaattcctcacttgtaatttgctagtaaaagactaaggctttgtttgtttgggcattcggcagttgca...
species | Oryza sativa |
transcript | LOC_Os04g57540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTCEST: gi|33797716|gb|CF324717.1|CF324717
genomic: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
EST: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTCEST: gi|16578185|gb|BI812280.1|BI812280
genomic: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
EST: TGATACTGAAGAGGTTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTCEST: gi|113931010|gb|DQ884105.1|DQ884105
genomic: TGATACTGAAGAGG-TGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
EST: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACCATTGGAGTTCEST: gi|29679123|gb|CB675398.1|CB675398
genomic: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
EST: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTCEST: gi|29658755|gb|CB655030.1|CB655030
genomic: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
EST: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTCEST: gi|218504868|gb|FG963478.1|FG963478
genomic: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
EST: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTCEST: gi|18387307|gb|BM420505.1|BM420505
genomic: ATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
EST: TTTATCATGATTTG TGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
genomic: TTTATCATGATTTGgtatgttcta ... atttttgcagTGTGAGCCAGTGGAGGACTTCTACAGAGCACGTGGTAAACTATTGGAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCACTACTGCCTCCTCCACAGTGTGAATCAAAGTTGATAACTAGGCCTGATGATACTGAAGAGGTGGTAAAGGAGCGATTGCGTGTTTATCATGATTTGgtatgttctagcttgtgttatttttatttattgaattcctcacttgtaatttgctagtaaaagactaaggctttgtttgtttgggcattcggcagttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG