1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCTGCAATGATGAACTTCGTGTGGTTTTTGGAACTGACACAACTGACATGTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttcttctgcttcttttggtctagatgtcgctgctaatgttttgttctgatggaagttcctaattatgttttcttggttctgcag
species | Oryza sativa |
transcript | LOC_Os04g56980.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|58601754|gb|CK012282.1|CK012282
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|84117678|gb|CD151445.1|CD151445
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCCGGAAGCAAAGAAATTTAAGCCCEST: gi|27576903|gb|CA999597.1|CA999597
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|86504620|gb|CI147253.1|CI147253
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: TTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|29642597|gb|CB647604.1|CB647604
genomic: TTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|29660434|gb|CB656709.1|CB656709
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCAATGATGAACTTCGTGTGGTTTTTGGAACTGACACAACTGACATGTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttcttctgcttcttttggtctagatgtcgctgctaatgttttgttctgatggaagttcctaattatgttttcttggttctgcag
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